Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b17
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 116 2e-26
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 2.0
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 4.6
07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56... 27 8.0
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 27 8.0
06_01_0326 + 2372176-2373057,2373146-2373610 27 8.0
02_05_0231 + 27037091-27039466 27 8.0
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703... 27 8.0
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 116 bits (278), Expect = 2e-26
Identities = 67/154 (43%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +2
Query: 68 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 238
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 239 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 403
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 404 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLR 505
E W MPFAFCTREK+ WCEFAE DG +T FL+
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQ 179
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 507 ELAIKYAMVIVSSILERDEKH 569
+LA KY MVIVS ILERD H
Sbjct: 180 QLAKKYNMVIVSPILERDVNH 200
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 483 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 373
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 456 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 325
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>07_01_0076 +
562248-562430,562540-562637,562887-562954,563376-563421,
563661-563767,563978-564027,564120-564202,564705-564819
Length = 249
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 256 RGSGLLVLGRESVCGDV 206
+GSG++VLG E CGDV
Sbjct: 61 KGSGVVVLGSEVGCGDV 77
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 168 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL 263
K P + L RL + + H L+ T RP+P++L
Sbjct: 106 KRPHQVMLTRLLALAAHALAEAET-RPEPQDL 136
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 295 RDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSLLSCSD 179
RD M ++ S G G+ V+G ++ D VS+ +CSD
Sbjct: 233 RDSMHHFGIRGESDGDGISVMGSSNIWID-HVSMSNCSD 270
>02_05_0231 + 27037091-27039466
Length = 791
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 304 GGHRDGMLNYSYLHNSRGSGLLVLGRE 224
GG+ G+ SYLH++ +G++++G E
Sbjct: 421 GGNLTGLRKGSYLHDAGAAGMVLIGPE 447
>01_07_0069 +
40869496-40869535,40869627-40869663,40870241-40870387,
40872360-40872405,40872580-40872846,40873151-40873540
Length = 308
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 224 FPAKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIF 340
F K+ PPRI V HS A P D E+K+ +
Sbjct: 87 FDTKEMAIAPPRIQPVSAHLHSSASPKDSDHQEKKQVCY 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,172
Number of Sequences: 37544
Number of extensions: 330771
Number of successful extensions: 1002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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