Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b17
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   109   1e-24
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    29   3.1  
Z75544-2|CAC42316.1|  480|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z75544-1|CAA99881.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   9.5  
U39993-4|AAA81088.1|  135|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   9.5  
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  109 bits (263), Expect = 1e-24
 Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
 Frame = +2

Query: 71  LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 244
           +E+ +   L G  L+E  RI +GR       L+ SSI              +   A+ EQ
Sbjct: 11  VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67

Query: 245 TRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 424
           TR PR+V+V  +Q+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPF
Sbjct: 68  TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127

Query: 425 AFCTREKQPWCEFAESAEDGPTTTFL 502
           AFCTRE+ PW EFAES   GPTT FL
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFL 153



 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 480 TGRPRPSFGELAIKYAMVIVSSILERDEK 566
           TG       +LA+K+ +VI+S ILERDE+
Sbjct: 146 TGPTTQFLSKLAVKHDIVIISPILERDEE 174


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 329 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 463
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 329 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 463
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 516 WRVPRRKVVVG-PSSADSANSHHGCFSLVQNAK-GMFHNSWKQMMLTP 379
           + +PR+      PSS++S    HG F +  N   G FH    Q M+TP
Sbjct: 843 FEIPRKTTAYNQPSSSNS--QQHGQFQVCSNGSLGFFHPQIYQSMMTP 888


>Z75544-2|CAC42316.1|  480|Caenorhabditis elegans Hypothetical
           protein K02A11.1b protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 356 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTF---LRGTRHQVR 526
           I+ +  Q G N++      NMP+  C  E+      +E A  G T ++   +RG   +  
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEMRGAPEKAM 197

Query: 527 NGDRVLDIRKGRE 565
             D  +  ++GRE
Sbjct: 198 LDDMKMLHQQGRE 210


>Z75544-1|CAA99881.1|  476|Caenorhabditis elegans Hypothetical
           protein K02A11.1a protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 356 IIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTF---LRGTRHQVR 526
           I+ +  Q G N++      NMP+  C  E+      +E A  G T ++   +RG   +  
Sbjct: 138 IVKILIQAGANLLAVNAEGNMPYDICDHEETLDVIESEMAARGITQSYIDEMRGAPEKAM 197

Query: 527 NGDRVLDIRKGRE 565
             D  +  ++GRE
Sbjct: 198 LDDMKMLHQQGRE 210


>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
           protein F21H7.3 protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 329 KAIFNKVKKIIDVAGQEGVNIICFQELW 412
           K +FNKVKK+++   Q+G     F+  W
Sbjct: 58  KILFNKVKKLMEDVPQDGRKKNWFENFW 85


>Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical
           protein W02A2.8 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 548 YRGHDHHCVLDGEFPEGRSWSARLQLIRQTRTTAASPLCRTRRACSTTLG 399
           Y  H   C + G  PE R+ ++++ ++++     A+P C+        LG
Sbjct: 77  YGAHVKLCEVGGWMPENRNKNSKVIVVKKGSAPPAAPRCKPLMTVEDYLG 126


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 504 RRKVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATS 361
           R K+    +S+   +  HG + +V+ AK  F + +++  +TPS P T+
Sbjct: 198 RMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245


>Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical
           protein F32B6.9 protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 486 GPSSADSANSHHGCFSLVQNAKGMFHNSW 400
           G  S     SHHGC SL ++ K   H SW
Sbjct: 388 GKGSIKDLESHHGCVSLKKDKK---HISW 413


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 424  EGHVPQLLETDDVNTLLAGNIDDFLDFIEN 335
            EGHVP ++ET    T+     DD  D  EN
Sbjct: 3091 EGHVPSVIETKTTTTVTREFYDDDQDEHEN 3120


>U39993-4|AAA81088.1|  135|Caenorhabditis elegans Hypothetical
           protein F47E1.1 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 302 TDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTRE 442
           ++RP+ E K    N    +  + G+  +  +C++ L N P ++   E
Sbjct: 79  SERPLEEDKTPSINGQCYLRPIGGKPFMECVCYRNLCNQPTSYADFE 125


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 424  EGHVPQLLETDDVNTLLAGNIDDFLDFIEN 335
            EGHVP ++ET    T+     DD  D  EN
Sbjct: 3091 EGHVPSVIETKTTTTVTREFYDDDQDEHEN 3120


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/89 (23%), Positives = 35/89 (39%)
 Frame = +2

Query: 86  NNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFPAKDEQTRPPRIV 265
           N NL+ ++L+E  R     +     K KES                 P K+E+      V
Sbjct: 14  NKNLSKKELQELKR-----KQQKSKKKKESKKRAKATKQAEIETREEPKKEEENGDDLDV 68

Query: 266 KVGIVQHSIAVPTDRPVNEQKKAIFNKVK 352
           ++  +  +I +  D P  +   AIF+  K
Sbjct: 69  EIDYIGETIEIEPDNPHAQYFSAIFDAFK 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,357
Number of Sequences: 27780
Number of extensions: 260920
Number of successful extensions: 827
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)