Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b15
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   1.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   5.4  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   7.2  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 306 LDE--EYIRKNFKLPQRALYLDPYRRPLITFP--MTQEDCKHFNLARKYKINQQILDGYL 473
           LDE   Y+ KNF+  +RAL  +P     +T+P  +     K +      K  +Q+L  YL
Sbjct: 652 LDEAKRYMSKNFQPDKRALLFNPRTANDMTYPPSLFSSLIKEYTSLGDIKEAKQVLSTYL 711

Query: 474 D 476
           +
Sbjct: 712 E 712


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 20/80 (25%), Positives = 28/80 (35%)
 Frame = +3

Query: 111  FNVFFGDSFQFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGPTTQ 290
            F+ F      F  M       G      S   L      + A+ E+    RP S+GP+ Q
Sbjct: 1559 FSKFVAGDPNFDVMRPATVGPGPFGKVASQKNLTVQTNTNNAAMESFYSDRPTSSGPSYQ 1618

Query: 291  NDFQLLDEEYIRKNFKLPQR 350
            N   L  +E +      P R
Sbjct: 1619 NRTPLTGQESMNMGVYSPYR 1638


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 436  FLAKLKCLQSSCVIGKVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF 290
            F+  + CL S     + +R  L+GS +   CG L      +  + WK +
Sbjct: 1663 FVDTMPCLLSKLEFDEELRIELFGSFWKEYCGELNI----NDPNTWKEY 1707


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 319  YSSSSNWKSF*VVGPADAGRGFVLASEDAPSRGTRQTSGRLD 194
            + S SN+KS    G +  G G +  S     RG+R+  G  D
Sbjct: 917  FGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERD 958


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 375 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 283
           V  GP++TP+++  S S   P+   G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 141 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGP-TTQNDFQLLDEE 317
           F   T+  T EG+ S  K ++P+V  VP      +A   P+     P T QN ++ L+  
Sbjct: 9   FSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKA---PKHIQEQPWTMQNWWRHLNWL 65

Query: 318 YIRKNFKLPQRALY 359
           +    F LP  A+Y
Sbjct: 66  HCMLIFGLPMIAIY 79


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 108 CLNCFAYVSIIFLFVLIYLNFARKISCHFSAI 13
           CL CF    I++ +   +  FAR+ S  FS I
Sbjct: 159 CLTCFLSSFILYAYHESWTKFARERSQEFSLI 190


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 357 YLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI---LDGYLDPGESI 491
           Y  P   P +   +   D +H  L R  +  + +   L G+L+PGES+
Sbjct: 220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,418
Number of Sequences: 5004
Number of extensions: 48626
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)