Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b15
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical p...    30   1.2  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    30   1.2  
Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase ...    27   6.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   6.5  
AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a prot...    27   6.5  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    27   8.6  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    27   8.6  
AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine re...    27   8.6  

>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 279 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 458
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 459 LDGYLDPGESISAPSV 506
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 279 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 458
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 459 LDGYLDPGESISAPSV 506
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical
           protein ZC204.12 protein.
          Length = 252

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 135 FQFCKMTSCCTCEGH-HSGAKSSLPLVCLVPRDGASSEARTKPRP-ASAGPTTQND 296
           ++ C M + C  E H   G+     +   +  + +S ++  KP+P A   PT +ND
Sbjct: 98  YEVCAMFTECETENHFEKGSDLRFEVELTIVMENSSKKSSVKPKPEAKQEPTKEND 153


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 279 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 458
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 459 LDGYLDPGESISAPSV 506
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical
           protein F22B3.4 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 214 AWFLAMEHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRC 357
           A+ LA +  R PGQ     +  P L  I S ST  TS   +S  +GRC
Sbjct: 181 AFALAFKSSRFPGQLVASRRGSPLLVGIKSNSTLHTSHFPVSYSKGRC 228


>U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase
           family protein 1 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 24/96 (25%), Positives = 44/96 (45%)
 Frame = +3

Query: 234 ASSEARTKPRPASAGPTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDC 413
           +S EAR   R  +    T+ DF+ L  +   +   L ++ L+LDP RR     P  +E  
Sbjct: 262 SSEEARNYIR--NLPKMTRRDFKRLFAQATPQAIDLLEKMLHLDPDRR-----PTAKEAM 314

Query: 414 KHFNLARKYKINQQILDGYLDPGESISAPSVFPYMK 521
           +H  LA  +    + +   +D  + + A ++  + K
Sbjct: 315 EHEYLAAYHDETDEPIAEEMDLNDDVRADTIDEWKK 350


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 138  QFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTK 257
            ++C   S C C G ++G ++    VCL PR    +  + K
Sbjct: 1313 RYC-FPSGCQCSGAYTGTQACANSVCLFPRTSCCAPYKKK 1351


>AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a protein
           protein 77 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 LGPQLKMISSCSTRSTSGKTLSCH 345
           L   LK + +C+TRS   K LSCH
Sbjct: 102 LASTLKNLENCTTRSLLLKDLSCH 125


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 482 SGIQVTVQYLLVNLILSG*VEMLTVFLCHRKGYKGTSIRVQIQRPLWQLKVFPDVL 315
           S I +  +YLL+  +L+    M+T  +C+   Y  + I  ++  P W  KVF D+L
Sbjct: 296 SSIPLVAKYLLLTFVLNIITIMVTTIICNI--YFRSPITHRL--PPWVRKVFLDIL 347


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 482 SGIQVTVQYLLVNLILSG*VEMLTVFLCHRKGYKGTSIRVQIQRPLWQLKVFPDVL 315
           S I +  +YLL+  +L+    M+T  +C+   Y  + I  ++  P W  KVF D+L
Sbjct: 296 SSIPLVAKYLLLTFVLNIITIMVTTIICNI--YFRSPITHRL--PPWVRKVFLDIL 347


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 482 SGIQVTVQYLLVNLILSG*VEMLTVFLCHRKGYKGTSIRVQIQRPLWQLKVFPDVL 315
           S I +  +YLL+  +L+    M+T  +C+   Y  + I  ++  P W  KVF D+L
Sbjct: 296 SSIPLVAKYLLLTFVLNIITIMVTTIICNI--YFRSPITHRL--PPWVRKVFLDIL 347


>AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein28 protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 124 KNTLKVFKL-FCLCFYHFFVCFNLF 53
           +N + +F + FC+  Y FF CF L+
Sbjct: 124 RNFIWIFSIIFCITLYEFFKCFLLY 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,907
Number of Sequences: 27780
Number of extensions: 283153
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)