Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b14
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 5e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.015
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.019
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.019
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.026
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.026
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.034
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 32 0.059
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.059
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 32 0.078
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.24
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.31
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.42
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.55
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.73
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 28 0.96
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.96
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 28 1.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.7
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 1.7
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 27 2.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 3.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.9
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.9
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 5.1
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 5.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 6.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 6.8
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 9.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.0
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 25 9.0
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQNLTVA-----EISVKRGGYAFVDFPDQSAADRAIDKLH 260
+Y+GNLP+ + + LF + + E + + G+ V F +++ A +I+KL+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 261 GYSFCGLPL 287
GY + G PL
Sbjct: 342 GYRYGGRPL 350
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAE-QNLTVAEI-SVKRG---GYAFVDFPDQSAADRAIDKL 257
++Y+GNL Y+V +++ + N+ EI ++ G G A +++ A AI L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 258 HGYSFCG 278
F G
Sbjct: 127 SNQKFMG 133
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 257
+Y+GN+PYE+ E V +F + L + S + GY F ++ D + A A+ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 258 HGY 266
+ Y
Sbjct: 67 NNY 69
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.015
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 257
+YIGNL ++++E + +F+E NL + + K G+AF+ + DQ + A+D +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 258 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGS 383
L+ VA+ K VP E+ A + G +GS
Sbjct: 93 TNVKLLD-RLVRVDHVASYK---VPQKEKEPANLVPLGESGS 130
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.9 bits (74), Expect = 0.019
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +3
Query: 69 LKTVSAMNKLYIGNLPYEVDEAAVRQLFA-----EQ-NLTVAEISVKRGGYAFVDFPDQS 230
++ +S +L++ NL Y E ++ LF EQ ++ + + + G+A++DF D
Sbjct: 316 IQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDAD 375
Query: 231 AADRAIDKLHGYSFCGLPLIVEPSVANKKMV 323
A RA +L F G L V P+ A ++
Sbjct: 376 DAVRAYLELDAKPFQGRLLHVLPAKARSSIL 406
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.019
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +3
Query: 57 MSEPLKTVSAMNKLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG--GYAFVDF 218
++ P T LY+G L V EA + +LF ++ V +V R GYA+V+F
Sbjct: 69 VATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
Query: 219 PDQSAADRAIDKLHGYSFCGLP 284
+ ++A+D+L+ G P
Sbjct: 129 HNMEDGEKALDELNYTLIKGRP 150
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.026
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQN------LTVAEISVKRGGYAFVDFPDQSAADRAIDKL 257
L++GNL +E +A +++ F + L E + K G+ FVDFPD +A++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 258 H 260
H
Sbjct: 290 H 290
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.5 bits (73), Expect = 0.026
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Frame = +3
Query: 42 KLLLKMSEPLKTV-SAMNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------G 200
K + + LK+V S +K+ + NLP +V EA V++LF + +S+ G G
Sbjct: 38 KPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKG 97
Query: 201 YAFVDFPDQSAADRAIDKLHGYSFCG-----LPLIVEPS-VANKKMVNVPNLERSSAAQL 362
A + F A RA ++ G G + +I++PS N V +SA
Sbjct: 98 IATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATAS 157
Query: 363 NEGSNGS 383
G+ S
Sbjct: 158 KNGAKSS 164
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.1 bits (72), Expect = 0.034
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 75 TVSAMNKLYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAA 236
+++A N +++GN+PY+V E + ++F + L + + GY F +F D
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETT 61
Query: 237 DRAIDKLH 260
A+ KL+
Sbjct: 62 AMAVRKLN 69
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.3 bits (70), Expect = 0.059
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQNLTVAEI----SVKRGGYAFVDFPDQSAADRAIDKLHG 263
L+I NL +++ + LF V +I +V+ G AFV + + A RA +KL G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYG-PVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
Query: 264 YSFCGLPLIV 293
Y+F L+V
Sbjct: 73 YNFMDRYLVV 82
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.059
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG------GYAFVDFPDQSAADR 242
++++G L ++ +R LF + +T+ V+RG G AFV F +Q D+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 243 AIDKLHGYSFCGLPLIVE 296
AI+ L+G + ++V+
Sbjct: 105 AIETLNGKTLDDREIVVQ 122
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.9 bits (69), Expect = 0.078
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 174 AEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMV 323
A +++ G AFV F + A RA+ L GY G P++++ S + ++
Sbjct: 61 ARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSKSDII 110
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 54 KMSEPLKTVSAMNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVD 215
K+++P + + +++G L + VD+ + Q F E V + G GY +VD
Sbjct: 251 KITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVD 310
Query: 216 FPDQSAADRAI 248
F AA A+
Sbjct: 311 FETPEAAKAAV 321
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +3
Query: 54 KMSEPLKTVSAMNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFV 212
K+SE LY+G LP+ E +R F++ V + + R YAF+
Sbjct: 93 KVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFG-PVLRLRMSRNRKTGSSKHYAFI 151
Query: 213 DFPDQSAADRAIDKLHGYSFCG 278
+F A+ + +H Y G
Sbjct: 152 EFESLDVANVVAETMHNYLLYG 173
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.42
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISV--KRGGYAFVDFPDQSAADRAIDKL 257
L + NL + E +R LF Q + +A+ + G+AFV + D+ A +A D+L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 258 HGYSFCGLPLIVE 296
GY + L L E
Sbjct: 264 DGYGWNNLILRCE 276
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.55
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Frame = +3
Query: 90 NKLYIGNLPYEVDEAAVRQLFAEQ--NLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 263
N +Y+GNLP E ++ LF+ Q + + G FV+F + A A+ L G
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
Query: 264 ------------YSFCGLPLIVEPSVA--NKKMVNVPNLERSSAAQLNEGSNGSPSGGWR 401
SF PL V S + N NV NL S N S + +GG
Sbjct: 486 VCLSSSIKGGIRLSFSKNPLGVRSSSSSHNNHNGNVRNLHSGSMNNYNTDSLLNHTGGHN 545
Query: 402 AIN 410
++
Sbjct: 546 EVH 548
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/75 (20%), Positives = 33/75 (44%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 272
+L++G +P + + F + + + G + FV+ D A ++ G F
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYG-QILDCKLMNG-FGFVEVEDARDARDIVNDFQGKEF 62
Query: 273 CGLPLIVEPSVANKK 317
G ++VEP+ ++
Sbjct: 63 MGSRIVVEPARGERR 77
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.96
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 558 LRLLVQSDMVGAIIGRQGSTIRL 626
LRLL+ ++G+IIGR G I+L
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKL 203
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 570 VQSDMVGAIIGRQGSTI 620
+ +DMVG IIGR GS I
Sbjct: 327 IPADMVGCIIGRGGSKI 343
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.96
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 257
+L++GNL +V++ ++ Q F+E + V + K G+ FV F D +A +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 258 HGYSFCGLPLIVEPSVANKK 317
+G P+ + + ++ K
Sbjct: 91 NGKYIGSRPVKLSRATSDVK 110
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 227 LVREIHECVATSFHRNFSNSQILFSKQLS 141
+VRE+ +C A+ +H+N S + K +S
Sbjct: 140 VVRELQKCTASYYHQNACPSSLALDKSIS 168
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 450 LLYDNPPIHIHSTRLWLSILLMA 382
+L+DN HIH LWL++L ++
Sbjct: 1028 ILHDNLKDHIHLEELWLNLLFLS 1050
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 427 SHPFNPFMALHPPDGEPLLPS 365
S+ FNPF + PP PL PS
Sbjct: 1622 SNHFNPFAKMQPPAPSPLQPS 1642
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 81 SAMNKLYIGNLPYEVDEAAVRQLFA-EQNLTVAEISVK-RGGYAFVDFPDQSAADRAIDK 254
S N +Y+GNL E +R F+ E+ +K FV+F + A +A++K
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658
Query: 255 LHG 263
+ G
Sbjct: 659 MQG 661
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK--RGGYAFVDFPDQSAAD 239
++ I L + + + +L+ + + T E++V R GYA D+P Q A D
Sbjct: 256 RIDIAELNSLIHDKSSNKLYMKTSFTTYEVAVVYYRVGYALDDYPSQEAWD 306
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 263
LYI NLP +E+ + LF N + + + G F D+ A+ I+K +
Sbjct: 386 LYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNN 445
Query: 264 Y 266
+
Sbjct: 446 F 446
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 3.9
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +3
Query: 78 VSAMNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR------GGYAFVDFPDQSAAD 239
+ + +K+YI NLP + E V +L ++ +K G+ F +F + S A+
Sbjct: 306 LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
Query: 240 RAIDKLHG 263
AI L G
Sbjct: 366 VAISGLDG 373
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 260
LY+ NLP +A+ LF+ + A V + S+A A D LH
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALH 56
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAE--QNLTVA----EISVKRGGYAFVDFPDQSAADRAIDKL 257
+++GNL V E+ + F + ++VA E +V R YAFV+F + A A++ +
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS-YAFVEFDEPEDAKEAMENM 66
Query: 258 HGYSFCGLPLIVEPS 302
+ C + V P+
Sbjct: 67 NYSILCDRCIRVSPA 81
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 556 HCVCWCRATWSALSSVARAVPFD 624
HC WC A+W A S+A+ FD
Sbjct: 406 HCF-WCSASWLAGISLAKKKNFD 427
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 254
+++ N+P E + +++ + A +R G A+VDF + A++K
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFVNHECVQLALNK 369
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +3
Query: 96 LYIGNLPYEVDEAAVRQLFAEQNLT-----VAEISVKRG-GYAFVDFPDQSAADRAI 248
+++GNL +E +E + + F + V + G G+A++ F D D+A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 138 QLPRQLHTANYRCIICSSLKQFSVAHSFSK 49
++ R + T C ICSSL +F + S K
Sbjct: 590 EIKRSVETGRAICCICSSLHKFLYSKSIRK 619
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 9.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 463 SAASTFIRQPSNSHPFNPFMALHPPDGEPLLPSLSWAALDLSRLGTLTIFLFATEGSTIN 284
+A T+ S+S PF H P+ +PS+S L S T+ S++
Sbjct: 277 AARRTYSSISSSSSPFKKKTQSHLPNRTTEVPSIS-KQLSKSSTSIATVAPSLASVSSVT 335
Query: 283 GSPQNEYPCSLSMARSAADWSGKSTN-A*PPRFT 185
SP + P S A+SA+ + + + PPR +
Sbjct: 336 KSP-SPTPQSAPRAQSASTETAQDLDFLTPPRLS 368
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 187 TEISATVKFCSANNCRTAASSTSYGKLPMYNLFIAETVFSGSLIFKSSFP 38
T IS +V F S +S P + ET+ SGS+ F S+ P
Sbjct: 776 TVISGSVSFMSTITAHDTSSGAVIVVEPTAGT-VTETIVSGSIPFTSTIP 824
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 206 CVATSFHRNFSNSQILFSKQLSYSCLVNFIRQIT 105
C A F +L + L SCL++F+ Q+T
Sbjct: 946 CAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLT 979
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 93 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYA 206
KL + P VDE ++ ++ LTV ++ + G YA
Sbjct: 388 KLLVNGEPQNVDETRASEILSQDELTV-DVDLGCGPYA 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,665
Number of Sequences: 5004
Number of extensions: 47487
Number of successful extensions: 232
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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