Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b10
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    30   0.20 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   1.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   5.6  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.7  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    25   9.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.7  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 174 YMRTEIIIPVSKDTFFNTKWKTVVAPLCAYDMLY 275
           YM  EI+ P S + FF   W T +   C Y   Y
Sbjct: 632 YMAPEILTPGSYNAFFADMWSTAIVLHCLYFRTY 665


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342  NIWNQEYEKGIASTTHFGLG-RPKWRPADIPTKQYVRVQVKNENPHMRIHNVLEW 503
            N  N+ Y +  AST + G    P W  ++IP ++  +V  K  N  ++ H   EW
Sbjct: 1148 NYLNKIYAEAAASTLNVGAAVSPSW-ASNIPLRRRTKVSAKAANKIVQTH---EW 1198


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -1

Query: 512  QYGPLQHVVDSHV--RILIF-NLYS 447
            Q GP QHVVD+ +  R L+F  LYS
Sbjct: 1066 QMGPFQHVVDNSINQRQLVFETLYS 1090


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 425 ISWSPFGSSEAEVCCRCYPFL 363
           + WSP    E EV C  + FL
Sbjct: 217 VGWSPLVFEEEEVTCSAFVFL 237


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 405 PKWRPADIPTKQYVRVQVKNENPHMRI 485
           PK+ PA+I T+Q   + ++    H +I
Sbjct: 361 PKYVPAEIETRQVYGISLQQHRNHAKI 387


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 442 MFEYKLKMRIRTCESTTCWS 501
           M E  L++ ++T    TCWS
Sbjct: 341 MLEQLLELSVKTLRQNTCWS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,741
Number of Sequences: 5004
Number of extensions: 53041
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)