Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b10
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 34 0.065
01_01_0540 + 3957622-3960903 30 1.4
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 1.8
04_02_0028 - 8736882-8737540,8737686-8738268 28 4.3
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 27 7.5
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 9.9
03_05_1016 + 29726949-29727503,29728863-29729504 27 9.9
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 34.3 bits (75), Expect = 0.065
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 511 STVHSNTLWIRMCGFSFLTCTRTYCL--VGISAGLHLGRPRPKCVVDAI 371
+ V + W R CG F CTR Y L ++ LH+G + DAI
Sbjct: 79 AAVEKSIFWGRSCGSYFEVCTRYYVLPPPNVTGALHIGHALTVAIEDAI 127
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 190 LLYPSPKI-LFSTRNGKQS*LRCALTICSTTHQIIIQTRQDLIDKNRRSSEGIFGIKSM 363
L+ P+ K+ + STR G LR T T + + RQD++ +RRS EGI + ++
Sbjct: 707 LINPTAKVHIASTRGGGDDPLRFNATALQTLPILYREQRQDIL--SRRSVEGILRVVTL 763
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 420 ADIPTKQYVRVQVKNENPHMRIHNVLEWTVLLSDG---KPSVC 539
A++P + Y VQ+KN M++ + +E ++ G KPS C
Sbjct: 591 AEVPCETYDAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSAC 633
>04_02_0028 - 8736882-8737540,8737686-8738268
Length = 413
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 374 YPFLILLIPNIPSDDLRFLSIRSCR 300
Y + + LI +IP D +R L + SCR
Sbjct: 82 YVYRLRLISSIPGDTIRILELASCR 106
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 503 PLQHVVDSHVRILIFNLYSNILLSGYISW 417
P++ VV ++R ++FN N+LL Y W
Sbjct: 371 PVKTVVADNLREVVFNSGKNVLLEFYAPW 399
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 481 ESTTCWSGPYC*ATVSRAF 537
E+ CWSGP C +++ R F
Sbjct: 2242 ETGYCWSGPICVSSIGRFF 2260
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 186 EIIIPVSKDTFFNTKWKTVVAPLCAYDMLYHPPDYNPNSARSDRQEPKIIRRNIWNQEYE 365
E+ I + +DT + K+K P C D Y P + +S + R+I ++
Sbjct: 281 ELAIEIVRDTLYYPKFKEFCRPHCYVDEHYFPTMLTIEAPQS------LANRSITWVDWS 334
Query: 366 KGIASTTHFGLG 401
+G A FG G
Sbjct: 335 RGGAHPATFGRG 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,496
Number of Sequences: 37544
Number of extensions: 317228
Number of successful extensions: 743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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