Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b10
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   6.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 405 PKWRPADIPTKQYVRVQVKNENPHMRIHNVLEW-TVLLSDGKPSV 536
           PKW+     T   V    K ++P +R +   EW TV   DG  SV
Sbjct: 204 PKWKDGIPVTLTTVPKHSKTKSPKLRPYPNWEWHTVGNCDGLTSV 248


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 343 FLLMIFGSCRSDLAEF 296
           FLLM FG C + L EF
Sbjct: 310 FLLMSFGYCIATLLEF 325


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 125 HNYRVLYVNIIDI 87
           +NY+ LY NII+I
Sbjct: 329 NNYKPLYYNIINI 341


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 125 HNYRVLYVNIIDI 87
           +NY+ LY NII+I
Sbjct: 347 NNYKKLYYNIINI 359


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 513 LSDGKPSVCD 542
           L DGKP +CD
Sbjct: 492 LCDGKPGLCD 501


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 IPTKQYVRVQVKNENPHMRIHNVLEWTVLLSDG 524
           + T+Q+V+ Q +  N H +    + WT   + G
Sbjct: 276 VNTEQFVKSQYQANNVHYQGKENILWTQASAKG 308



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = +1

Query: 268 CSTTHQIIIQTRQDLIDKNRRSSEGIFGIKSMRK 369
           C   ++++ +   +++ KN+ + + I G+K  R+
Sbjct: 327 CWNENRLLDRRNIEVVAKNKETLQAITGLKVKRR 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,162
Number of Sequences: 438
Number of extensions: 3965
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)