Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b05
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 231 4e-62
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 198 5e-52
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 136 2e-33
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 100 1e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 93 3e-20
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 90 1e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 89 3e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 3e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 83 2e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 83 2e-17
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 82 5e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 82 5e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 77 2e-15
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 74 1e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 70 2e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 8e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 62 6e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 60 2e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 2e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 6e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 8e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 44 1e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.001
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.29
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.89
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.2
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.6
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 2.7
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 3.6
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 3.6
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 3.6
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 4.7
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 231 bits (565), Expect = 4e-62
Identities = 105/141 (74%), Positives = 129/141 (91%)
Frame = +3
Query: 72 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 251
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 252 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 431
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 432 TNVREDIRQLESGVHVVVGTP 494
T VR+D+ L++GVHVVVGTP
Sbjct: 125 TLVRDDMAALQAGVHVVVGTP 145
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 198 bits (482), Expect = 5e-52
Identities = 96/142 (67%), Positives = 115/142 (80%), Gaps = 1/142 (0%)
Frame = +3
Query: 72 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 248
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 249 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 428
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 429 GTNVREDIRQLESGVHVVVGTP 494
GT+V DI++L+ G HVV GTP
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTP 147
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 136 bits (329), Expect = 2e-33
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Frame = +3
Query: 24 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 191
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 192 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 371
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 372 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 494
+V LG H+N K GGT +R+DI +L VH+VVGTP
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTP 170
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 100 bits (240), Expect = 1e-22
Identities = 51/131 (38%), Positives = 87/131 (66%), Gaps = 3/131 (2%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 284
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 285 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 461
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 462 ESGVHVVVGTP 494
+ +V+GTP
Sbjct: 228 KIDAQIVIGTP 238
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 92.7 bits (220), Expect = 3e-20
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 120 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 299
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 300 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 467
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 468 GVHVVVGTP 494
H+VV TP
Sbjct: 173 SPHIVVATP 181
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 90.2 bits (214), Expect = 1e-19
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Frame = +3
Query: 120 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 299
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 300 IDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 473
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 474 HVVVGTP 494
+VV TP
Sbjct: 191 DIVVATP 197
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 89.4 bits (212), Expect = 3e-19
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = +3
Query: 90 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 269
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 270 ATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 449
A F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 450 IRQLESGVHVVVGTP 494
L HV+V TP
Sbjct: 158 AVALSKKPHVLVCTP 172
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 85.8 bits (203), Expect = 3e-18
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Frame = +3
Query: 117 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 296
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 297 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 467
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 468 GVHVVVGTP 494
+V+ TP
Sbjct: 380 RPDIVIATP 388
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 83.0 bits (196), Expect = 2e-17
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Frame = +3
Query: 114 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 293
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 294 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 440
+ QID + R AL+L PTRELAQQ+ V+ + L A C I NV
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL----EKLTAFCSKHIRFINV 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 83.0 bits (196), Expect = 2e-17
Identities = 46/127 (36%), Positives = 71/127 (55%)
Frame = +3
Query: 114 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 293
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 294 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 473
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 474 HVVVGTP 494
HVVV TP
Sbjct: 127 HVVVATP 133
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 81.8 bits (193), Expect = 5e-17
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 281
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 282 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 458
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 459 LESGVHVVVGTP 494
L GV+++V TP
Sbjct: 208 LVKGVNLLVATP 219
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.8 bits (193), Expect = 5e-17
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Frame = +3
Query: 96 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 275
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 276 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 431
F I ++ I + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 432 TNVREDIRQLESGVHVVVGTP 494
E Q+ G H+VV TP
Sbjct: 363 HAFEEQSFQMSQGAHIVVATP 383
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 76.6 bits (180), Expect = 2e-15
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 290
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 291 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 464
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 465 SGVHVVVGTP 494
HVVV TP
Sbjct: 241 KHPHVVVATP 250
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.1 bits (174), Expect = 1e-14
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 96 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 275
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 276 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 440
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 441 REDIRQLESGVHVVVGTP 494
++ I L+ G +VV TP
Sbjct: 532 KDQIADLKRGAEIVVCTP 549
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 69.7 bits (163), Expect = 2e-13
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 290
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 291 LQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 455
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 456 QLESGVHVVVGTP 494
L GV + + TP
Sbjct: 241 DLIRGVEICIATP 253
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 64.5 bits (150), Expect = 8e-12
Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +3
Query: 105 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 284
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 285 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 452
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 453 RQLESGVHVVVGTP 494
+L S ++++V TP
Sbjct: 156 ERL-SRMNILVCTP 168
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 61.7 bits (143), Expect = 6e-11
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Frame = +3
Query: 120 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 299
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 300 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 470
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN- 285
Query: 471 VHVVVGTP 494
V++GTP
Sbjct: 286 ASVIIGTP 293
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 60.1 bits (139), Expect = 2e-10
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Frame = +3
Query: 111 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 290
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 291 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 416
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 417 ACIGGTNVREDIRQLESGVHVVVGTP 494
A GG ++R IRQ++ G ++ TP
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATP 313
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +3
Query: 117 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 296
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 297 QI---DTSIRECQALILAPTRELAQQIQKV 377
++ DT ALI+APTRELA QI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.4 bits (130), Expect = 2e-09
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Frame = +3
Query: 183 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 335
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 336 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 494
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTP
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTP 277
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.4 bits (110), Expect = 6e-07
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Frame = +3
Query: 171 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 332
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 333 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHVVVGTP 494
IL+PTRELA QI + L + IGG + +RE+ ++++ TP
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP 171
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.0 bits (109), Expect = 8e-07
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Frame = +3
Query: 141 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 305
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 306 TSI-RECQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHV 479
+ +A+I+APTREL +QI + L + K ++E +L +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDM 169
Query: 480 VVGTP 494
+GTP
Sbjct: 170 CIGTP 174
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 44.0 bits (99), Expect = 1e-05
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Frame = +3
Query: 138 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 311
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 312 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVH 476
+ + +++ PTREL Q+ K + A G ++R + QL E +
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 477 VVVGTP 494
V+V TP
Sbjct: 263 VLVSTP 268
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 135 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 311
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 312 IRECQALILAPTRELAQQIQKVVI 383
+ A + PT+ LAQ +K +I
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLI 377
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 291 LQQIDTSIRECQALILAPTRELAQQIQK 374
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.29
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 87 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 233
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.89
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 84 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 176
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 255 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 371
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 287 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 388
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 61 DLREWTLGHLTPT 99
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 401 QVITKSYHHLLNLLGQLSCGSQDQ 330
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 366 IQKVVIALGDHLNAKCHACIGGTNVRED 449
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 333 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 491
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 461 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 360
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 81 QGPFPEVHRNYLDPSMAHFWNPLANL 4
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 90 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 230
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,189
Number of Sequences: 5004
Number of extensions: 49903
Number of successful extensions: 184
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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