Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b04
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 1.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 1.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 2.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 2.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 3.9
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 24 3.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 5.2
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 23 6.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 6.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 6.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 6.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 6.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 6.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 6.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 23 6.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 6.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 6.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 6.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 6.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 6.9
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 23 9.1
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 23 9.1
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 23 9.1
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 88 VSPEVLNYHGYSFEPNQIAM-FWKKDCRKFLWKG 186
VS HG++ Q + WK+ K LWKG
Sbjct: 269 VSKTAKQVHGHTLTRGQFMLTLWKRGGPKALWKG 302
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 155 KKIAGNFFGKGNQKLTLSMFSYAKCLKIYSKNFVLIKDSLR 277
K G++ G+G++K M + CL + FV D+LR
Sbjct: 756 KTTLGDYLGEGDEKSISVMHEFIDCLSFINLKFV---DALR 793
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 203 LSMFSYAKCLKIYSKNFVLIKDSLRYKK 286
+S F++ CL ++SK F +K L +K
Sbjct: 283 ISEFTFNDCLNMFSKCFKFLKQKLSDRK 310
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 2.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 25 LRPCGNGPFRTREKNTLALHVVSPEVLNYHGYSFEPN-QIAMFWKKDCRK 171
L P GN + L+V SP ++ H Y +PN ++ +FW K
Sbjct: 647 LDPQGNYVSLFSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTHK 696
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 3.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 109 YHGYSFEPNQIAMFWK 156
YHGY+ Q+ FW+
Sbjct: 3121 YHGYNVSSPQVQWFWR 3136
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 278 ILKNLLLIRNFYCKFSN 228
ILK + +IRNF FSN
Sbjct: 3 ILKRIFIIRNFIFPFSN 19
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 40 NGPFRTREKNTLALHVVSPEVLNY 111
N +RT K+ L +SPE LN+
Sbjct: 333 NASWRTWMKHKFKLKTISPETLNW 356
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 63 KKYFSSSRGFPRGPKLSRLQFRAQSNRYVLEKRLQEISLERE 188
KK +S + PKL+ L+F+ ++ + L+++ E+ ERE
Sbjct: 42 KKPSVNSANETKNPKLASLEFQLENLKNDLKRK--ELEFERE 81
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 92 PPRS*TITATVSSPIK-SLCSGKKIAGNFFGKGNQKLTLSM 211
P +T P++ S SG+ G+FFG N+K +M
Sbjct: 531 PKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAM 571
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 166 RKFLWKGKSKVNS*YVQLC 222
R+F WKG K YVQ C
Sbjct: 939 RRFTWKGIRKQIQEYVQNC 957
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 21 STKALRQRTFSDQRKKYFSSSRGF 92
S KA Q+ S+Q KKY GF
Sbjct: 211 SGKAKEQKIVSEQSKKYNMFEEGF 234
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 23.0 bits (47), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 167 GNFFGKGN--QKLTLSMFSYAKCLKIYSKNFVLIKDSLRYK 283
GNF G + QKL S+ + +YS V + D+L YK
Sbjct: 341 GNFRGALSIYQKLRTSLEASQSLSVLYSPGLVGLGDALHYK 381
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 7 CPCGCLLRPCGNG 45
CP G LLRP +G
Sbjct: 68 CPSGSLLRPASDG 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,111
Number of Sequences: 5004
Number of extensions: 20781
Number of successful extensions: 76
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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