Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b04
         (290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0111 - 12982291-12982704,12982788-12983267,12983371-129836...    26   4.4  
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    25   7.7  
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    25   7.7  
05_06_0016 + 24958681-24958872,24959390-24959472,24959534-249596...    25   7.7  

>10_07_0111 -
           12982291-12982704,12982788-12983267,12983371-12983645,
           12983735-12984065
          Length = 499

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 30  ALRQRTFSDQRKKYFSSSRGFPRGPKLSRLQ 122
           +L Q+       ++ SS RG PRG +  RLQ
Sbjct: 22  SLAQQLLGQSTSQWQSSRRGSPRGCRFDRLQ 52


>09_01_0175 -
           2509014-2509064,2509389-2509490,2509603-2509729,
           2509852-2511564,2512335-2512424,2512533-2512801,
           2513118-2513687,2513703-2514065
          Length = 1094

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +1

Query: 52  RTREKNTLALHVVSPEVLNYHGYSFEPNQIAMFWKKDCRKFLWKGKSKVNS 204
           R   +  L    +S   +  HGY  E N    FW    ++ + +  S +NS
Sbjct: 768 REETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINS 818


>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
            27403297-27403449,27403544-27403644,27403945-27404041,
            27404542-27404651,27404775-27404878,27405129-27405308,
            27405398-27405741,27405841-27405905,27405981-27406450,
            27406939-27407793,27408045-27408116,27408475-27408575,
            27409069-27409170,27409295-27409456,27409665-27411230,
            27411384-27411602,27413924-27414198,27414291-27414596,
            27414727-27415012,27415085-27415087,27415162-27415416,
            27415537-27415803
          Length = 2236

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 94   GKPREELKYFFLWSEKVR 41
            GKP   + YFF+ +E+VR
Sbjct: 1320 GKPEHVINYFFMLAEEVR 1337


>05_06_0016 +
           24958681-24958872,24959390-24959472,24959534-24959621,
           24960250-24960468,24960958-24961692,24961780-24962124,
           24962196-24962411,24962551-24962847
          Length = 724

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 43  GPFRTREKNTLALHVVSPEVLNYHGYS 123
           GPF T +    +L V S +++ +HG S
Sbjct: 234 GPFGTEDGTPFSLPVSSGKIIGFHGRS 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,743
Number of Sequences: 37544
Number of extensions: 128968
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)