Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21b04
(290 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 28 1.3
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 28 1.3
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 27 1.7
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 27 1.7
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 26 5.2
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 26 5.2
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 26 5.2
AC087232-3|AAK09077.1| 177|Caenorhabditis elegans Hypothetical ... 25 6.8
Z82075-2|CAB60333.1| 328|Caenorhabditis elegans Hypothetical pr... 25 9.1
AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical ... 25 9.1
AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protei... 25 9.1
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 77 LFTWFPPRS*TITATVSSPIKSLCSGKKIAGNFF 178
L WFP TAT+ P+ SL S K + FF
Sbjct: 647 LICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFF 680
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 77 LFTWFPPRS*TITATVSSPIKSLCSGKKIAGNFF 178
L WFP TAT+ P+ SL S K + FF
Sbjct: 647 LICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFF 680
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 99 GPKLSRLQFRAQSNRYVLEKRLQEISLE 182
G +L RL+ + +RY+ EKR QE++ E
Sbjct: 96 GDQLDRLKTEFRESRYLTEKRRQELAHE 123
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 99 GPKLSRLQFRAQSNRYVLEKRLQEISLE 182
G +L RL+ + +RY+ EKR QE++ E
Sbjct: 96 GDQLDRLKTEFRESRYLTEKRRQELAHE 123
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 KGNQKLTLSMFSYAKCLKIYSKNFVLIKDSL 274
+GN + +S+F KIYSK+F K+ +
Sbjct: 454 RGNVRSAISLFGLEPIAKIYSKHFENRKEGI 484
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 51 SDQRKKYFSSSRGFPRGPKLSRLQFRAQSN 140
+D+ ++ + +RG P PKL+R R++S+
Sbjct: 250 NDENMEFDTRARGAPSSPKLTRRAKRSESS 279
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 63 KKYFSSSRGFPRGPKLSRLQFRAQSNRYVLE 155
K + S GFP+GPK + ++ N++++E
Sbjct: 254 KNVVTFSAGFPKGPKDLEILSQSIDNKWIVE 284
>AC087232-3|AAK09077.1| 177|Caenorhabditis elegans Hypothetical
protein Y92H12BR.2 protein.
Length = 177
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 269 NLLLIRNFYCKFSNILHN*TY*ELTFDFPFQRNF 168
N + ++ FY + +N +H + F PF++NF
Sbjct: 91 NAMPVQRFYPRINNFVHRSHQMQNNFKKPFRQNF 124
>Z82075-2|CAB60333.1| 328|Caenorhabditis elegans Hypothetical
protein W07A8.5 protein.
Length = 328
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 290 FFFYILKNLLLIRNFYCKFSNILH 219
F F I+ +LLLI F+ F+ I H
Sbjct: 14 FIFIIVASLLLIFEFFLLFATISH 37
>AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical
protein Y75B8A.2a protein.
Length = 233
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 105 KLSRLQFRAQSNRYVLEKRLQEISL-----EREIKS*LLVC 212
++SRL++ N+Y+ KR E+S E+++K VC
Sbjct: 173 QISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKVWFQVC 213
>AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protein
protein.
Length = 233
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 105 KLSRLQFRAQSNRYVLEKRLQEISL-----EREIKS*LLVC 212
++SRL++ N+Y+ KR E+S E+++K VC
Sbjct: 173 QISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKVWFQVC 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,410,716
Number of Sequences: 27780
Number of extensions: 118377
Number of successful extensions: 401
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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