Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21b04
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.062
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.19 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.19 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.25 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   7.1  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 26.6 bits (56), Expect = 0.062
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 99  GPKLSRLQFRAQSNRYVLEKRLQEIS 176
           G +L+RL+     NRY+ E+R Q++S
Sbjct: 29  GEQLARLKREFAENRYLTERRRQQLS 54


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 49  FRTREKNTLALHVVSPEVLNYHGY 120
           F TR   T  L  V P+V+ Y GY
Sbjct: 310 FTTRHNATCYLSHVDPDVVQYFGY 333


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 49  FRTREKNTLALHVVSPEVLNYHGY 120
           F TR   T  L  V P+V+ Y GY
Sbjct: 16  FTTRHNATCYLSHVDPDVVQYFGY 39


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 0.25
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 105 KLSRLQFRAQSNRYVLEKRLQEIS 176
           +L+RL+     NRY+ E+R Q++S
Sbjct: 31  QLARLKREFAENRYLTERRRQQLS 54


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 121 SFEPNQIAMFWKKDCR 168
           SF     A FW  DCR
Sbjct: 109 SFTTTVSARFWLMDCR 124


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = +1

Query: 130 PNQIAMFWKK 159
           PN++++FW++
Sbjct: 95  PNELSLFWQQ 104


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 58  REKNTLALHVVSP 96
           REKN   LH++ P
Sbjct: 457 REKNVSLLHLIFP 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,895
Number of Sequences: 438
Number of extensions: 1428
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)