Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a24
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   3.9  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   5.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.9  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 75  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 203
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 78  STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 203
           S+   S PS+S++  + SP+   +SS  S      SSS+S++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 75  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIR 215
           +S+   S  S+S+S  S S +   TSS  S      SSS+S++ + R
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 197
           T   S PS+S+S  S SP+   + S  S      SSS+S
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186



 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 75  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 203
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 105 TSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADG 224
           T+    S SP+   TS  GS++      S+SA  AI+++G
Sbjct: 370 TNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNG 409


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 59  VLIKSCLDEEDQQALHQRLKG---ELLPRQVMYQLVRLHRPRLRQ*LNLSSPRYSGRWL 226
           V + + +DE ++ + + RL+    E L   V+ Q  R HR  L +  +L  P Y   WL
Sbjct: 511 VSLNTLVDEWNKNSDNPRLEKFSFEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWL 569


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 177  SRGRW-SRTSWYITWRGS 127
            +R  W SR +W++ W GS
Sbjct: 1228 NRDGWRSRPTWFVVWEGS 1245


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 99  PSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 197
           P TS S  S  P    TSS G+      S+STS
Sbjct: 306 PPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 102 STSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 203
           S+S+S  S S     TSS  S  P   SSS+S++
Sbjct: 118 SSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,329
Number of Sequences: 5004
Number of extensions: 22333
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)