Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a24
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0340 + 2534998-2535660                                           29   2.2  
08_02_0634 + 19543767-19544057                                         27   6.6  
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    27   6.6  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    27   8.7  
08_02_0830 - 21617485-21618198                                         27   8.7  
06_03_1159 + 28084786-28085428,28085520-28086166                       27   8.7  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    27   8.7  

>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 96  KPSTSASKESCSPAK*C-TSSCGSIDPGY--DSSSTSAALAIRADGCHGW 236
           KP++S+S  S S       ++C   +PG    SSS+S     RAD C  W
Sbjct: 57  KPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSCERW 106


>08_02_0634 + 19543767-19544057
          Length = 96

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +3

Query: 156 CGSIDPGYDSSSTSAALAIRADGCHGWWRS-CR 251
           C  +DP   SS+    +  R   C G WR  CR
Sbjct: 59  CDLLDPSLSSSAAGKQVGKRELACRGLWRGRCR 91


>01_06_0090 +
           26358051-26359157,26359582-26359701,26359968-26360099,
           26360194-26360375,26360488-26360602,26362001-26362135,
           26362261-26362395
          Length = 641

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 69  NHASTRKISKPSTSASKESCSPAK*CTSSCGSID 170
           +++++ ++S PSTSA   S S +   T SC S D
Sbjct: 221 SYSASSRVSLPSTSAPSPSSSTSTSPTYSCSSSD 254


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 72  HASTRKISKPSTSASKESCSPAK 140
           HAS+R  S  S+S+S  SCS A+
Sbjct: 44  HASSRHASSSSSSSSLPSCSAAR 66


>08_02_0830 - 21617485-21618198
          Length = 237

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 159 GSIDPGYDSSSTSAALAIRADGCHGW 236
           GS      SSS+S+ L  RAD C  W
Sbjct: 72  GSSAASSSSSSSSSGLPCRADSCERW 97


>06_03_1159 + 28084786-28085428,28085520-28086166
          Length = 429

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 90  ISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGC 227
           + K     S +SC   +    S G +  G  SSSTSAA A+R  GC
Sbjct: 8   LKKSLNCKSGDSCGVIE-REESQGGVTAGKKSSSTSAA-ALRRSGC 51


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 87  KISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRAD 221
           ++ KP T  SKE+ SPA        S   G  + +    LA  AD
Sbjct: 440 RVRKPGTGTSKETRSPALSPPPQAASFKSGLPTDAFPGRLADNAD 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,918,772
Number of Sequences: 37544
Number of extensions: 177141
Number of successful extensions: 561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)