Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a24
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 90  ISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAAL 206
           +S PST      C+  +   S C      Y +  T + L
Sbjct: 343 VSYPSTETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQL 381


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 67  NQHLNRKLYFCIIN 26
           N + N+KLY+ IIN
Sbjct: 105 NNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 67  NQHLNRKLYFCIIN 26
           N + N+KLY+ IIN
Sbjct: 105 NNNYNKKLYYNIIN 118


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 67  NQHLNRKLYFCIIN 26
           N + N+KLY+ IIN
Sbjct: 325 NNNYNKKLYYNIIN 338


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 156 TSWYITWRGSSS 121
           T+WY+ W+G  S
Sbjct: 672 TNWYMGWKGMLS 683


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 5/13 (38%), Positives = 6/13 (46%)
 Frame = +3

Query: 279 CSNRYV*WWWKQR 317
           C N    WWW  +
Sbjct: 359 CQNEMNKWWWNMK 371


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 238 HQPWQPSARIARAAE 194
           H+PW     + RAA+
Sbjct: 462 HEPWNAPLNVQRAAK 476


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 93  SKPSTSASKESCSPAK*CTSS 155
           S P  S S  S SPA   TSS
Sbjct: 67  SSPQHSGSSASTSPAARTTSS 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,068
Number of Sequences: 438
Number of extensions: 1657
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)