Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21a19
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 30 1.5
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 30 1.5
01_06_1451 + 37451004-37451113,37451422-37451661,37451765-374518... 30 1.9
08_02_0593 + 19078264-19078609,19078724-19082256 29 4.4
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 4.4
08_02_0588 + 19036509-19039235 29 4.4
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 29 4.4
06_03_0305 + 19388745-19388963,19389069-19389209,19389799-193898... 28 7.7
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 28 7.7
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +3
Query: 330 ASIVPALEDISRQRGNSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAKNSPDTSTKSA 509
AS++ ++ +S DP + L D N E DK+ N D K+
Sbjct: 565 ASVLDEIDPLSSADSPHPDPIQNDDSDNHMSLQDSRTVRDNNYESDKSKANKND--DKNV 622
Query: 510 NTLPLPVIAGFDAKVLRDIGLSDCSKNCKERILSLNR 620
+T P + D K + D+G S+ ++ + IL + R
Sbjct: 623 STDPAFLGTVDDDKNVMDLGYSEVERHRRLEILMVKR 659
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 408 TSETVLHDYEAENTLNAEIDKNAKNSPDTSTKSANTL-PLPVIAGFDAKVLRDIG 569
TS ++HD L+ I+KN KNS D K ++ P P + D DIG
Sbjct: 301 TSPGLVHDITDNAKLDDSIEKNMKNSSDKYLKEGYSIEPFPESSVDDTFEFGDIG 355
>01_06_1451 +
37451004-37451113,37451422-37451661,37451765-37451846,
37452159-37452200,37452285-37452344,37453020-37454663,
37454763-37454864,37455846-37455986,37456077-37456202,
37456376-37456543
Length = 904
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 366 QRGNSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAKNSPDTSTKSANTLPLPVIAGFD 545
Q +SS+ N I TS +H L D+NA NS D + A+ +PL + G D
Sbjct: 445 QGSSSSNSNAIHVDTSHNAVHGKSNFCPLG---DRNAANSSDLAELLASPIPLELTGGND 501
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 351 EDISRQRGNSSDPNNIPTKTSETVLHDYEAEN 446
ED +RGN + N I TKT V+H ++ +N
Sbjct: 909 EDQKLERGNLALKNCIETKTPVRVIHGFKGQN 940
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 351 EDISRQRGNSSDPNNIPTKTSETVLHDYEAEN 446
ED +RGN + N I TKT V+H ++ +N
Sbjct: 626 EDQKLERGNLALKNCIKTKTPVRVIHGFKGQN 657
>08_02_0588 + 19036509-19039235
Length = 908
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 351 EDISRQRGNSSDPNNIPTKTSETVLHDYEAEN 446
ED +RGN + N I TKT V+H ++ +N
Sbjct: 829 EDQKLERGNLALKNCIKTKTPVRVIHGFKGQN 860
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 113 GIFTIHFNRKNPNVFKRDSGGPAGMLCG*FSGMFRRFCQEITDRHHYCCRC 265
G +H VF SG M+ S +FR + +TD +CC C
Sbjct: 340 GQVLLHHGSHRHGVFSVTSGRRVNMVMWCKSSVFREMKKFMTDFSGFCCEC 390
>06_03_0305 +
19388745-19388963,19389069-19389209,19389799-19389836,
19390161-19390227,19392057-19392467
Length = 291
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 309 RQEALSHASIVPALEDISRQRGNSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAKNSP 488
R+E +HA ++ L + + + D N++ + TSE LH + E AE+ A+
Sbjct: 158 RREVGNHARVLNKLLTLREKITQNPDDNSLLSSTSE--LHSSKPETV--AELVSVAEKLG 213
Query: 489 DTSTKSANTLPL 524
+ SAN P+
Sbjct: 214 SSQGSSANPFPI 225
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 28 RKIYMIMRRIFPCKRCYSQYFKNV 99
R++ I+ R++PCK C +++FK V
Sbjct: 107 RELMAIISRLYPCKEC-AEHFKEV 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,767
Number of Sequences: 37544
Number of extensions: 277394
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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