Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a19
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    31   0.98 
AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    31   0.98 
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    31   0.98 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   1.3  
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 390 NNIPTKTSETVLHDYEAENTLNAEIDKNAKNSPDTSTKSANTLPLPV-IAGFD 545
           NNIP ++S  +L     E  +N+E  KN+K    +S  S+N+    V + GFD
Sbjct: 129 NNIPRRSSAMLL---SPEMAMNSEQQKNSKKRRSSSRSSSNSRFATVCVGGFD 178


>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +3

Query: 375 NSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAK---NSPDTSTKSANTLPLPVIAGFD 545
           ++S P+N P  T ET     + +N  N+EI  + +    SPD  T++     L  +   +
Sbjct: 281 STSIPSNGPAATKETFFK-LQLQNMFNSEILDSLEPCFKSPDHETRAVMVDVLRTMVDAN 339

Query: 546 AKVLRDIGLSDCSKNCKERILSLN 617
           A+++RD  L       K   + LN
Sbjct: 340 AQMIRDFLLKQSKTKDKNEDVLLN 363


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform a protein.
          Length = 1085

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +3

Query: 375 NSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAK---NSPDTSTKSANTLPLPVIAGFD 545
           ++S P+N P  T ET     + +N  N+EI  + +    SPD  T++     L  +   +
Sbjct: 517 STSIPSNGPAATKETFFK-LQLQNMFNSEILDSLEPCFKSPDHETRAVMVDVLRTMVDAN 575

Query: 546 AKVLRDIGLSDCSKNCKERILSLN 617
           A+++RD  L       K   + LN
Sbjct: 576 AQMIRDFLLKQSKTKDKNEDVLLN 599


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = +3

Query: 303 TERQEALSHASIVPALEDISRQRGNSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAKN 482
           +ER+  +S  S   ++E+IS+ +  ++ P +  T    + ++   ++N  N E+D NA N
Sbjct: 657 SERRPEISSISEENSIENISKTKTPTTVPKSTITGRMPSSVNP--SDNLSNNEMDGNAHN 714

Query: 483 SPDTSTKSANTLPLPVIAGF 542
            P   +  + T   P  + F
Sbjct: 715 QPSEFSNLSETSITPASSHF 734


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +3

Query: 312 QEALSHASIVPALEDISRQ-RGNSSDPNNIPTKTSETVLHDYEAENTLNAEIDKNAKNSP 488
           Q+A + +S +  +ED+    R       ++   + +      E + T N  +    K S 
Sbjct: 159 QKAKAMSSPMVRMEDMDEVLRSKLRGEESLVPMSQKDTEEGKELDKTENGPL--KCKTSS 216

Query: 489 DTSTKSANTLPLPVIAGFDAKVLRDIGLSDCSKNCKE 599
                  N + LP I+G D +V  ++   DC+K C E
Sbjct: 217 GYYVVVGNEIVLP-ISGGDVQVYNEVEQGDCAKYCSE 252


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 NETLVDQLECYVDDLVECFEDFVKK 233
           N  +++ L CY  + VEC E F K+
Sbjct: 5   NLPVINALHCYAREKVECLEKFTKR 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,274
Number of Sequences: 27780
Number of extensions: 269505
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)