Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21a15
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 32 0.38
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 31 0.87
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 30 2.0
09_02_0386 - 8371631-8372125,8373696-8374139 29 4.6
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 29 4.6
01_05_0303 + 20647654-20647830,20647981-20648067,20648549-206487... 29 4.6
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 28 8.1
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 28 8.1
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 8.1
01_01_0615 - 4576554-4576560,4577808-4577824,4578776-4578911,457... 28 8.1
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 541 QPPQHHRHSVHLPHKLLPQHSVPVQ---IQVLASGSRHQ 648
+PP HH H H PH + + PVQ I + S H+
Sbjct: 942 EPPHHHNHCCHEPHDQVKNDTHPVQEHSISIEESSDHHE 980
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 600 MLGQQLVWQVYRMPVVLWW 544
+LG L+WQV+R+ V LWW
Sbjct: 5 LLGLALLWQVHRLLVRLWW 23
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 523 RICRLVQPPQHHRHSVHLPHKLLPQHSVP 609
R C++V+PP+ HR + LLP++ P
Sbjct: 53 RTCQIVEPPREHRRAGRRALSLLPENPEP 81
>09_02_0386 - 8371631-8372125,8373696-8374139
Length = 312
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 391 DGDENGEGAAFVVLAPNAKLPNTGALVVGLVKLNVALFSVLDPPNNGFEASPL 233
DGD GEG +++LA P A + L LF++ P G ++ L
Sbjct: 183 DGDLGGEGDRWLLLARTPSKPTRLATAIELAAPPPILFAIATLPGRGASSTSL 235
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 638 LPEAKTCICTGTECWGSSLCGRCTECRW 555
L EAK CTG C CG T+ W
Sbjct: 250 LGEAKNYNCTGNTCKDGQECGEYTQLMW 277
>01_05_0303 +
20647654-20647830,20647981-20648067,20648549-20648719,
20649377-20649430,20650614-20650994
Length = 289
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 451 VKPPKGVGLFAPKP 410
+KPPKGVGL AP P
Sbjct: 241 LKPPKGVGLIAPLP 254
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 508 MQDRPRICRLVQPPQHHRHSVHLPHKLLPQHSVP 609
M + + + PP HH H HLP LP + P
Sbjct: 1 MGEETLVAMPLAPPHHHHHHAHLP--ALPHLAAP 32
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 544 PPQHHRHSVHLPHKLLPQHSVPVQIQVLASGSRHQRQ 654
PP HHR +HL H P+ S P ++++ A+ + + Q
Sbjct: 7 PPSHHRLHLHL-HLHTPKPSPPRRLRLAAAAAASRLQ 42
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 544 PPQHHRHSVHLPHKLLPQHSVPVQIQVLASG-----SRHQRQ 654
PP H RHS+ H LP +P Q A+G +HQ+Q
Sbjct: 785 PPYHLRHSIDGMHHQLPGPPLPPSYQHRAAGGVVFPGQHQQQ 826
>01_01_0615 -
4576554-4576560,4577808-4577824,4578776-4578911,
4579488-4579543,4580540-4580635,4580864-4580927,
4581022-4581077,4581170-4581249,4581778-4581842,
4581970-4582177,4582889-4583447
Length = 447
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 472 LAVLPLGKQQIRMQDRPRICRLVQPPQHHRHSVHLP 579
+++ PLG+Q+ M D ++ R P H H V P
Sbjct: 399 ISIAPLGEQRTDMTDEQKLPRRANLPSTHVHVVVAP 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,353
Number of Sequences: 37544
Number of extensions: 297871
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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