Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a13
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.2  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   2.7  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   3.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   3.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   4.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   4.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   4.8  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    24   8.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.3  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 337 GGRAHSPPGVKWLLEPMDIYN 275
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 213 PHPSNRNAILLHGRNRQGGGTYP 145
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 118 HLHKVIRIPSVCVTIHS*RKKNFLNTITNVIGNHH 14
           HLHK   +P +       R + +++T+TN   N+H
Sbjct: 544 HLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNH 578


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 210 HPSNRNAILLHGRNRQGGGTYPRGLTRRPTT 118
           +P++   + L+ ++ Q   TYP+ L  RP++
Sbjct: 404 YPTSAEQMGLYPQDSQNKDTYPKSLVNRPSS 434


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   SDSMVVTNNICNRIQKIFFSL 67
           S S  V++N+ NRI +IFF L
Sbjct: 231 SSSSWVSSNVSNRIVRIFFLL 251


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 184 ASRQK*AGRWYLPARTHKTSYHHLHKVIRIPSVCVT 77
           A+R++   R Y+P    +T Y HL  ++     C+T
Sbjct: 541 AARRRFVKRTYIPLPEKETRYKHLSHLLHNQVHCLT 576


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 224 YNGCPTLQTETQYCFTAEIGRA 159
           Y  CP L +  ++CF+A   +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 245 LISQGGWRIYVVDVHGLQ*PLYTRWA-VSSSAH 340
           L++  G ++Y VD+H +Q   +TR A + S  H
Sbjct: 198 LLANDGAKVYSVDIHNVQ--CFTRGAGIRSKKH 228


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 328 AHSPPGVKWLLEPMDIYNVNAPPTLR 251
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,711
Number of Sequences: 5004
Number of extensions: 33381
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)