Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a10
         (627 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012077-1|AAH12077.1| 1072|Homo sapiens ring finger protein 31 ...    32   1.4  
AY256461-1|AAP12522.1|  921|Homo sapiens zinc in-between-ring-fi...    32   1.4  
AB265810-1|BAF35583.1| 1072|Homo sapiens ubiquitin ligase protein.     32   1.4  
BC080538-1|AAH80538.1|  236|Homo sapiens chromosome 1 open readi...    31   4.4  
BC062571-1|AAH62571.1|  236|Homo sapiens chromosome 1 open readi...    31   4.4  

>BC012077-1|AAH12077.1| 1072|Homo sapiens ring finger protein 31
           protein.
          Length = 1072

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 165 PGPCFLCFCQGNGTAACWRRENRRCDAESYHYHGIGKRGTRVRRGL 302
           PGPCFLC     GT  C   +   C A  + +HG   R   +R+ L
Sbjct: 214 PGPCFLC-GSAPGTLHCPSCKQALCPACDHLFHGHPSRAHHLRQTL 258


>AY256461-1|AAP12522.1|  921|Homo sapiens zinc
           in-between-ring-finger ubiquitin-associated domain
           protein.
          Length = 921

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 165 PGPCFLCFCQGNGTAACWRRENRRCDAESYHYHGIGKRGTRVRRGL 302
           PGPCFLC     GT  C   +   C A  + +HG   R   +R+ L
Sbjct: 63  PGPCFLC-GSAPGTLHCPSCKQALCPACDHLFHGHPSRAHHLRQTL 107


>AB265810-1|BAF35583.1| 1072|Homo sapiens ubiquitin ligase protein.
          Length = 1072

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 165 PGPCFLCFCQGNGTAACWRRENRRCDAESYHYHGIGKRGTRVRRGL 302
           PGPCFLC     GT  C   +   C A  + +HG   R   +R+ L
Sbjct: 214 PGPCFLC-GSAPGTLHCPSCKQALCPACDHLFHGHPSRAHHLRQTL 258


>BC080538-1|AAH80538.1|  236|Homo sapiens chromosome 1 open reading
           frame 104 protein.
          Length = 236

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 294 GAPLCPAFRSHDSGSFQHHIFYSLFANMQPCHYP 193
           G  +CP F  H S SF HH   SLF +  P   P
Sbjct: 116 GTAVCP-FSPHSSPSFSHHRTLSLFISPAPLSCP 148


>BC062571-1|AAH62571.1|  236|Homo sapiens chromosome 1 open reading
           frame 104 protein.
          Length = 236

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 294 GAPLCPAFRSHDSGSFQHHIFYSLFANMQPCHYP 193
           G  +CP F  H S SF HH   SLF +  P   P
Sbjct: 116 GTAVCP-FSPHSSPSFSHHRTLSLFISPAPLSCP 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,065,918
Number of Sequences: 237096
Number of extensions: 2220846
Number of successful extensions: 6792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6792
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)