Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a09
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.16 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.16 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 441 LLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVWRDQ 298
           + NL+   L +GHWS  +Q ++P+ +      W  I  +L    W +Q
Sbjct: 279 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVAI-NELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 441 LLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVWRDQ 298
           + NL+   L +GHWS  +Q ++P+ +      W  I  +L    W +Q
Sbjct: 247 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVAI-NELQDSFWLEQ 293


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   STIVIYFIGKLVVITKSEENRII 70
           STI+++FI K++ I  S  + ++
Sbjct: 401 STILLWFINKIIPIRMSIHDELL 423


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 607 PLVVCNSISMLAYAEPSDECKK 542
           P ++ NS+++L +  PS+  +K
Sbjct: 223 PCILINSVALLVFYVPSESGEK 244


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 423 FLTNSIKWSMDNNKKGDP 476
           F    +KW  +N  KG P
Sbjct: 318 FQNRRMKWKKENKSKGTP 335


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 286 C*SRSKRSVDPLYNKVNN 233
           C +R  R +D +YN  NN
Sbjct: 71  CTTRKTRIIDVVYNASNN 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,582
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)