Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a08
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF022970-2|AAB69896.2|   75|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 178 KYFCTDDFLCSSDILNLFHNILFLTKGPKYIYFAMV 285
           KY CT   +   DI  L H+I+  TKG +Y Y+  +
Sbjct: 234 KYLCTSR-IAQMDITTLRHDIIAATKGKEYKYYTHI 268


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 516 KRKSNSYIILYRKANFQTRR*ASSINNSTRLRIRNKNKTLQ 394
           +RK   Y + YRK  +Q R+ A ++    R+R   K + ++
Sbjct: 740 RRKRQKYRLRYRKKKYQLRKGALNMEQKERMRELKKRRRMK 780


>AF022970-2|AAB69896.2|   75|Caenorhabditis elegans Hypothetical
           protein F13A2.2 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 512 LFHKVFICKIICNVDRTTRISSDREHKIA--YIQFVVYYSYR--CWLNS 646
           +FH  F CK+  N D  T    D  H++     + ++YYSY+   WL +
Sbjct: 1   MFHYSFRCKLTMNYDIATAF-YDSTHEVCSQSSENLIYYSYQLTMWLEA 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,936
Number of Sequences: 27780
Number of extensions: 313437
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)