Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21a02
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.13
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 29 0.51
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 28 1.6
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 27 2.7
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 27 3.6
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.6
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.8
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 6.3
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 31.5 bits (68), Expect = 0.13
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = -1
Query: 619 FTLLENATAFSNRSNVSTQCAAVSTYRLDSNEPPQSNS*PLPRSKPTATM*GNSPIDAAS 440
F ++E A + S+ S+ S+ ST S+ P + S S +++ +S ++S
Sbjct: 108 FNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSS--SSSKSSSSS 165
Query: 439 PPSIYRSSGGTVEDMILSHSRSAIRLIVLVFS 344
S RSS T SH S+ R V ++
Sbjct: 166 SKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYT 197
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 29.5 bits (63), Expect = 0.51
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 589 SNRSNVSTQCAA-VSTYRLDSNEPPQSNS*PLPRSKPTATM*GNSPIDAASPPSIYRSSG 413
S+R++ STQ A + R DSNE P + S L RS PT ++ NS + + I S
Sbjct: 406 SSRNSKSTQSAVPENVSRFDSNE-PSATSPILKRSSPTDSISQNSGLPSRLTEPISSPST 464
Query: 412 GTVE 401
+++
Sbjct: 465 SSID 468
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +3
Query: 339 QTEKTRTIKRIAERECDKIISSTVPPLDLYILGGEAA-SMGEFPYMVAVGFDRGNGYEFD 515
QT + + + + I +VPP + GG A+ S+G + G R YE D
Sbjct: 282 QTPSYMSANHLPKVDSKSPIPFSVPPSRATLTGGYASGSIG----LSTPGLSRAPHYELD 337
Query: 516 CGGSLLSNLYVLTAAHCVDTLDRLEKAV 599
G LLS + +D+ +++E V
Sbjct: 338 NGNRLLSKRKLHDLLQQIDSEEKIEPEV 365
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 339 QTEKTRTIKRIAERECDKIISSTVPPLDL 425
QT+ R ++ E+ CDK+IS T PLDL
Sbjct: 117 QTQPARISTQVWEQICDKLISIT--PLDL 143
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 495 HGRSQQQPCKEILPSMQLPRQVYTGRAEVQLKI*FCHI 382
H + Q ++ PS PR YTGRA + + C +
Sbjct: 144 HIKKSVQAIQKASPSNSAPRSWYTGRASLNTRKLVCQV 181
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 636 FPNTQHLRCSRMRLLFPTDPMCRRSAQLSVH 544
F T+HLR ++ FP + R QLSVH
Sbjct: 10 FAWTKHLRLREFKIPFPNRLVVRSLNQLSVH 40
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 704 VPSITYLPPTGDGQWNSWIFCTRFQTHSIYVAREC 600
+ S ++ P + +S IFC + IYV R C
Sbjct: 14 INSASFGPASSSTSHSSTIFCVHHRVRYIYVPRHC 48
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 586 NRSNVSTQCAAVSTYRLDSNEPPQSNS*PLPRSKPTATM*GNSPIDAASPPSIYRSSGGT 407
+R S C + S EPP S++ PR+ PT + G S I+A S+ +S G
Sbjct: 235 DREASSKNCLS-KALAFSSIEPPASSASTSPRNTPTPSNNGTS-INANVTSSLTSNSTGK 292
Query: 406 VE---DMILSHSRSAI 368
D++++ S+ ++
Sbjct: 293 TSKTTDLLIAASKKSL 308
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 499 LPRSKPTATM*GNSPIDAASPP 434
LP + PT N+PI+A+ PP
Sbjct: 577 LPENLPTTRSSSNNPIEASRPP 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,991
Number of Sequences: 5004
Number of extensions: 63394
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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