Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21a02
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    30   1.6  
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    30   1.6  
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583...    29   2.8  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   2.8  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    29   3.8  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    28   6.6  
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838...    28   8.7  
04_01_0013 - 217743-217839,218021-218131,218226-218428,218540-21...    28   8.7  

>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = -1

Query: 715 IALAFLVLLIFPQPGMVNGTVGSSVLVSKHTAFTLLENATAFSNRSNVST--QCAAVSTY 542
           +A+  L +L     G   G  G++ L    ++ +L  N  +F      S    C+ ++T 
Sbjct: 108 LAVGLLSVLAQGATGSKGGIYGAASLSGSSSSISLGFNPASFLPFLQTSKWLPCSDLAT- 166

Query: 541 RLDSNEPPQSNS*PLPRSKPTATM*GNSPI--DAASPPSIYRSSGGT 407
              S+ PP S S   P   P  ++     +   A+S P+I RSSGG+
Sbjct: 167 --SSSAPPSSPSPSPPPPAPAPSIRPKKALVSSASSSPAIARSSGGS 211


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 397 YLQLYLRSTCIYLAGKLHRWENFLTWLLLASTVVM 501
           Y  L++  TC+YL+ K   W    TW+ LA  VV+
Sbjct: 548 YTLLFVHGTCLYLSRK---WYKKTTWMYLAVPVVL 579


>12_01_0684 +
           5828947-5829012,5831123-5832103,5832200-5832326,
           5832623-5832705,5832752-5832917,5833337-5833399,
           5833624-5833733,5834227-5834276,5834528-5834664,
           5835180-5835281,5835871-5835988,5836575-5836627,
           5836710-5836813,5836910-5836972,5837375-5837503,
           5837508-5837605,5838446-5838500,5839260-5839311,
           5839996-5840113,5841906-5842035,5842156-5842437
          Length = 1028

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 315 PTTVDKFGQTEKTRTIKRIAERECDKIISSTVPPLDLYILGGEAASMGEFP 467
           PT++ KFGQ E  R    +A   CD  IS +   + L I+G   A  G  P
Sbjct: 378 PTSLVKFGQLEDIRRYLEVANLLCD--ISFSFSVVFLVIIGSVLALYGTDP 426


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 709 LAFLVLLIFPQPGMVNGTVGSSVLVSKHTAFTLLENATAFSNRSNVSTQCAAVSTYRLDS 530
           L+F+++ + PQ   + G++GS ++        ++  A AF     +S     V   R  S
Sbjct: 181 LSFILIFVLPQQFRIRGSIGSQIIA--QIGIFIMSTAVAFC--WEISHHFVQVVHTRRCS 236

Query: 529 NEPPQSNS 506
             PPQS +
Sbjct: 237 FAPPQSTA 244


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 559 AAVSTYRLDSNEPPQSNS*PLPRSKPTATM*GNS--PIDAASPPSIYRSSGGTVEDMILS 386
           A++S+    ++ PP  +  P+P + P  T+  +S  P    SP S   SS G++  +  +
Sbjct: 25  ASISSPSPSTSTPPPPS--PIPSTSPRPTLRSSSLPPASTPSPSSSASSSSGSLHHLHPT 82

Query: 385 HSRSA 371
           HS  A
Sbjct: 83  HSLPA 87


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -3

Query: 632 QTHSIYVAR-----ECDCFFQPIQCVDAVRSCQYIQVG*QRTSAIEFVTITTVEANSNHV 468
           ++  IYVA+     + D  F  ++     R C +  +  +    +EF T T   A   H+
Sbjct: 669 ESRHIYVAKVKNKKDKDEVFDELKAAGLKRPCSFTDISSENALLLEFETATDAAAAKAHI 728

Query: 467 RKFSH 453
           R+  H
Sbjct: 729 RRQLH 733


>06_03_1040 +
           27082978-27083086,27083574-27083632,27083759-27083833,
           27083908-27084024,27084207-27084277,27084432-27084732,
           27084949-27085238,27085779-27085833
          Length = 358

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 715 IALAFLVLLIFPQPGMVNGTVGSSV--LVSKH----TAFTLLENATAFSNRSNVSTQCAA 554
           +++ FLV +IF   G+V+     +V  +V ++        + +N  A+    N+S +C  
Sbjct: 58  VSVFFLVGVIFVPVGVVSLLAAQNVVEIVDRYDDACVPANMTDNKLAYIQNPNISKECTR 117

Query: 553 VSTYRLDSNEP 521
             T   D N+P
Sbjct: 118 TLTITEDMNQP 128


>04_01_0013 -
           217743-217839,218021-218131,218226-218428,218540-218654,
           219038-219204,219505-219565,219872-219990,220206-220286
          Length = 317

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 719 IYCFSVP-SITYLPPTGDGQWNSWIFCTRFQTHSIYVAR--ECDCFFQPIQCVDAVR 558
           I  F VP SI +LP    G + SWI+   FQ + +   +    D F  P    DA+R
Sbjct: 193 IMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKGDSSDDFSFPSLFPDAMR 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,371,315
Number of Sequences: 37544
Number of extensions: 413205
Number of successful extensions: 1216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)