Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p24
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 608 IINFIVF*IAWFVFLIYFF 552
           +I  I F +A+F+FL +FF
Sbjct: 464 VIARITFPVAYFMFLTFFF 482


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 608 IINFIVF*IAWFVFLIYFF 552
           +I  I F +A+F+FL +FF
Sbjct: 450 VIARITFPVAYFMFLTFFF 468


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 608 IINFIVF*IAWFVFLIYFF 552
           +I  I F +A+F+FL +FF
Sbjct: 484 VIARITFPVAYFMFLTFFF 502


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 608 IINFIVF*IAWFVFLIYFF 552
           +I  I F +A+F+FL +FF
Sbjct: 433 VIARITFPVAYFMFLTFFF 451


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +3

Query: 438 HQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINN 608
           H   T   V +  +     TP+   I+M    +P+TS            +E D IN+
Sbjct: 822 HCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVIND 878


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 453 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNP-FNP 620
           +++++    I+++  P+   I  ++  + +  W+     N    L+ND+  +P  NP
Sbjct: 38  NTLISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNP 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,831
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)