Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p23
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    28   1.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   2.6  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -3

Query: 323 VSLKKSLFVSTII----NVYLHIYRLNLIFKPYLV 231
           +S+  +  V+T+I    NV+LHI+ L  +FK +L+
Sbjct: 14  LSIDNNYLVTTLISLKENVFLHIFTLTFLFKAFLL 48


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 437 ADTADKSWKMIRKVGRPKKVLIETGDALL-WQTLASVVIPGFTINRICVLSQRVLSRNVP 613
           +DT  KS  ++ KV   K +++E   +++ W+     V+    +N   VL   VLS +  
Sbjct: 256 SDTLSKS--ILIKVEADKDMILEAPLSIVGWERNGKGVLGPRVVNLSTVLDPFVLSESAS 313

Query: 614 KMPLSVRNWLTV 649
            + LS+  W  V
Sbjct: 314 TLNLSLMRWRLV 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,531
Number of Sequences: 5004
Number of extensions: 61458
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)