Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p23
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265     31   1.2  
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105...    30   1.6  
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737...    28   6.4  
01_02_0132 + 11444480-11444609,11444698-11445131,11445210-114454...    28   6.4  
08_02_0778 + 21119812-21119941,21120030-21120463,21120576-211206...    28   8.4  
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220...    28   8.4  
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072     28   8.4  
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446...    28   8.4  

>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
          Length = 400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 356 EVGESFRPIVPVKVVRASYGVAFAYVLADTADKSWKMIRKVGRPKKVLIETG-DALLW 526
           E+ +  RP+   + V A+     A+  A  AD +W+ I K+ R + + + T  + L W
Sbjct: 151 ELEDDLRPLQVTRFVEATVSKMLAFADALAADNTWRPIDKLSRSRLMCLCTSINELFW 208


>08_01_0132 +
           1055977-1056483,1058083-1058186,1058330-1058385,
           1058534-1058688,1058842-1058955,1059207-1059449
          Length = 392

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 456 LLSAVSARTYANATP*LARTTFTGTIGRKDSPTSFA*HT*ITYPGVSEEISVRFYHY 286
           LL   +A   A ATP  A     G +G +D+  S + ++  +    S   SVR YHY
Sbjct: 58  LLLGAAAAVVAAATPRTAHAASGGVMGGRDTSPSPSSYSSSSSSSSSSSPSVRHYHY 114


>06_01_0956 +
           7374273-7374356,7374502-7374963,7375043-7375673,
           7375806-7375875,7376208-7376508
          Length = 515

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 347 YANEVGE--SFRPIVPVKVVRASYGVAFAYVLADTADKSWKMIRKVGRPKKVLIETGDA 517
           +A EV E  +F+P V  KV  A     +A V  DT   +W +      P   ++  GDA
Sbjct: 197 FAPEVAEGMAFKPSVIDKVHNADLLAGYAKVSIDTVKDTWSVYPLPVPPNDEIMTLGDA 255


>01_02_0132 +
           11444480-11444609,11444698-11445131,11445210-11445431,
           11445510-11445971,11446053-11446885,11446968-11447138,
           11447218-11447518
          Length = 850

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 347 YANEVGE--SFRPIVPVKVVRASYGVAFAYVLADTADKSWKMIRKVGRPKKVLIETGDA 517
           +A EV E  +F+P V  KV  A     +A V  DT   +W +      P   ++  GDA
Sbjct: 431 FAPEVAEGMAFKPSVTDKVHGADLLAGYAKVSIDTVKDTWSVYPLPVPPNDEIMTLGDA 489


>08_02_0778 +
           21119812-21119941,21120030-21120463,21120576-21120695,
           21121356-21121898,21121988-21122172,21122255-21122425,
           21122505-21122805
          Length = 627

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 347 YANEVGE--SFRPIVPVKVVRASYGVAFAYVLADTADKSWKMIRKVGRPKKVLIETGDA 517
           +A EV E  +F+P V  KV  A     +A V  DT   +W        P   ++  GDA
Sbjct: 243 FAPEVAEGMAFKPSVTDKVHSADLLAGYAKVSIDTVKDTWSSYPLPVPPNDEIMTLGDA 301


>06_03_0098 -
           16621473-16621511,16621617-16621655,16621741-16622029,
           16622112-16622282,16622361-16623244,16623332-16623775,
           16623854-16624561
          Length = 857

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 672 GMEASPRATVSQFRTLKGIFG 610
           G+  SPR T+S+FR++ G+ G
Sbjct: 34  GLPTSPRKTLSRFRSICGVIG 54


>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
          Length = 258

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -3

Query: 455 SCQQYRREHTRMLLRNLLGPPSLVQ*DGKILQLHSRNIPK*--RTQVSLKKSLFVSTIIN 282
           SC  Y  E   +++ +L   P+    D   L+    N+P+   +   S  KS  +ST I 
Sbjct: 174 SCSSYPNE---LIIESLSFEPNDESGDSASLEAKLSNLPEEFQKAVYSYLKSRCISTDIT 230

Query: 281 VYLHIYRLNLIFKPYL 234
            +LH Y +N     YL
Sbjct: 231 DFLHAYMINKECHEYL 246


>02_01_0601 +
           4465775-4465924,4466070-4466531,4466613-4467445,
           4467528-4467597,4467613-4467698,4467865-4468036,
           4468481-4468519,4469410-4469430
          Length = 610

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 347 YANEVGE--SFRPIVPVKVVRASYGVAFAYVLADTADKSWKMIRKVGRPKKVLIETGDA 517
           +A EV E  +F+P V  KV  A     +A V  DT   +W     +  P   ++  GDA
Sbjct: 219 FAPEVAEGMAFKPSVTDKVHGADLLAGYAKVSIDTVKDTWSGYPLLVPPNDEIMTLGDA 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,896,008
Number of Sequences: 37544
Number of extensions: 359920
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)