Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p21
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    68   1e-12
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.2  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   8.1  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 37/104 (35%), Positives = 63/104 (60%)
 Frame = +3

Query: 228 LTVXVMFGGGAELLFNKVKRKEIALPPLKTFLPDSXNXNWTLXELLIWLKDNLLVEREEL 407
           + + V   GG +LLFNK K   ++L  L +    S      L + +  + +     +++L
Sbjct: 1   MAIKVELLGGLDLLFNKQKALSLSLSNLGSTKLGS------LIDYMAQIIEK--PSQKDL 52

Query: 408 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 539
           F+ + +VRPGI+VL+N++DWEL  +  Y L+E D+++F+STLHG
Sbjct: 53  FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 3   PGQKILNDEXKIFSNLINNSEQF 71
           PGQK+   E  ++S+L+N  E F
Sbjct: 53  PGQKLTLAEKVLYSHLVNPEESF 75


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 393 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 527
           EREE+FL+DD  +     L++ +D  L        + +EL  +    FIS
Sbjct: 7   EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 444 RVYQVGQNHPSRTTLLFPPA 385
           ++  VG+N+P+ +  LFPP+
Sbjct: 169 KLKDVGENYPNLSEFLFPPS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,981
Number of Sequences: 5004
Number of extensions: 36188
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)