Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p18
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    71   1e-13
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   6.1  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   6.1  

>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 46/150 (30%), Positives = 72/150 (48%)
 Frame = +2

Query: 239 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 418
           YP  L  YK PPV  I+++EFET A++R+                      ++ +L D R
Sbjct: 26  YPTRLNFYKKPPVSEISIEEFETWAIDRLVVLGEIESAMLRNKTKNELNGIIKKIL-DKR 84

Query: 419 AQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKM 598
                  A+  + +         E RRKDH +HFILRLA+ R++ELR  F+  E  LF+ 
Sbjct: 85  LPMSSNMARTVKGNSLD------EERRKDHYSHFILRLAFSRSDELRIRFLRAESTLFRF 138

Query: 599 RFAVMRGEAVEVFFKLNNLCYTTISEDEKN 688
           RF        + F    +  + ++S++EK+
Sbjct: 139 RFVNEETRERQAFIDSLDFQWESVSQEEKD 168


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 303 SNSCKVMFSTGGILYNCKSCG 241
           S  C  +F  G ++Y CK+CG
Sbjct: 95  SKVCGHVFRAGEVIYRCKNCG 115


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 300 NSCKVMFSTGGILYNCKSCG*SSN 229
           + C  +F  G + Y CK+C   SN
Sbjct: 94  SKCGHIFRKGEVFYRCKTCSVDSN 117


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 372 RNPRRVVAVDNVLNK--FTRSRANVSNSCKVMFSTGG 268
           R  RR   VD+   K  F R + +VSNSCK+  S  G
Sbjct: 82  RRNRRNSRVDSEARKRQFDRVKHSVSNSCKLHLSLQG 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,679
Number of Sequences: 5004
Number of extensions: 46674
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)