Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p18
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    62   4e-10
07_03_1229 + 25023537-25024094                                         28   8.5  

>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/65 (43%), Positives = 38/65 (58%)
 Frame = +2

Query: 488 EARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTT 667
           E   KD I+HF+LRL YCRTEELR+WF++ E  LF+ RF +   E+  +      L Y  
Sbjct: 89  ETLNKDIISHFVLRLVYCRTEELRKWFLSMETTLFRYRFRLESPESQRMLMSEFRLPYKA 148

Query: 668 ISEDE 682
           +   E
Sbjct: 149 LPHSE 153


>07_03_1229 + 25023537-25024094
          Length = 185

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 345 DNVLNKFTRSRANVSNSCKVMFSTGGILYNCKSCG 241
           ++ L   + + +   N+CKV    G  LY C  CG
Sbjct: 68  EHALTLSSLAASGTCNTCKVTSQAGCYLYRCAPCG 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,833
Number of Sequences: 37544
Number of extensions: 243669
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)