Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p18
(713 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 114 3e-25
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 111 3e-24
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 111 3e-24
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 111 3e-24
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 111 3e-24
BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein. 105 2e-22
AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A... 105 2e-22
AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A... 105 2e-22
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 114 bits (275), Expect = 3e-25
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKRRKLRLAGDQRNASYPHCLQFYLQPPSENISLTEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y KL + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYREKL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEK 685
ELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEK 159
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 111 bits (266), Expect = 3e-24
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEK 685
ELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEK 159
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 111 bits (266), Expect = 3e-24
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEK 685
ELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEK 159
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 111 bits (266), Expect = 3e-24
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEK 685
ELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEK 159
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 111 bits (266), Expect = 3e-24
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEK 685
ELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEK 159
>BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein.
Length = 158
Score = 105 bits (251), Expect = 2e-22
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 673
ELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
>AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 105 bits (251), Expect = 2e-22
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 673
ELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
>AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 105 bits (251), Expect = 2e-22
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXX 370
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVK 65
Query: 371 XXNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTE 550
+E++ + ++LR Y L + ++E RR+DHI+HFILRLAYC++E
Sbjct: 66 --GTEQYQSKLESELRKLKFSYRENL---------EDEYEPRRRDHISHFILRLAYCQSE 114
Query: 551 ELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 673
ELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 115 ELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,462,971
Number of Sequences: 237096
Number of extensions: 1358382
Number of successful extensions: 3105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3098
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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