Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p18
         (713 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...   137   2e-32
AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...   134   1e-31
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...   134   1e-31

>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score =  137 bits (331), Expect = 2e-32
 Identities = 64/152 (42%), Positives = 94/152 (61%)
 Frame = +2

Query: 239 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 418
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 419 AQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKM 598
            +GL+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ 
Sbjct: 83  REGLRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRF 142

Query: 599 RFAVMRGEAVEVFFKLNNLCYTTISEDEKNEV 694
           +FA + G  V+ F + N      ++E +K+EV
Sbjct: 143 KFAALSGFEVKQFLEANGFEIHPLTEAQKDEV 174


>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score =  134 bits (324), Expect = 1e-31
 Identities = 63/152 (41%), Positives = 93/152 (61%)
 Frame = +2

Query: 239 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 418
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 419 AQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKM 598
            +GL+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ 
Sbjct: 83  REGLRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRY 142

Query: 599 RFAVMRGEAVEVFFKLNNLCYTTISEDEKNEV 694
           +FA +    V+ F + N      ++E +K+EV
Sbjct: 143 KFAALSSFEVKQFLEANGFEIHPLTEAQKDEV 174


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score =  134 bits (324), Expect = 1e-31
 Identities = 63/152 (41%), Positives = 93/152 (61%)
 Frame = +2

Query: 239 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 418
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 419 AQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKM 598
            +GL+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ 
Sbjct: 83  REGLRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRY 142

Query: 599 RFAVMRGEAVEVFFKLNNLCYTTISEDEKNEV 694
           +FA +    V+ F + N      ++E +K+EV
Sbjct: 143 KFAALSSFEVKQFLEANGFEIHPLTEAQKDEV 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,706,918
Number of Sequences: 53049
Number of extensions: 449476
Number of successful extensions: 1166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)