Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p18
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical
           protein W02D9.1 protein.
          Length = 503

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 48/168 (28%), Positives = 76/168 (45%)
 Frame = +2

Query: 194 RKSTKTPATGNQFELYPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXX 373
           R+S KT  T    E+ P  LQLY+ PP ++I+L EF+ +A+ER+                
Sbjct: 24  RQSIKTAPT-KAAEI-PEYLQLYQTPPGDDISLTEFDDIAMERLKLLKSFENLKDSVSLY 81

Query: 374 XNSEEFVEFVLNDLRAQGLKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEE 553
             ++EF +         G K      +K      +  +E  R+D+I HFILRLA+CRT E
Sbjct: 82  --NDEFKDKFRK--LCDGTKLIVFPDQKPP--HQEEVYELWRRDNIGHFILRLAFCRTPE 135

Query: 554 LRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVI 697
            ++W    E +  + R    R + ++      N     +   EK  +I
Sbjct: 136 NQKWLTQIEGDFLRFRLRQEREQVLDSALANVNFTIEKLGYTEKQAMI 183


>Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical
           protein R11.3 protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 227 QFELYPHDLQLYKIPPVENITLQEFETLAL 316
           Q+E  P +L L K+P VENIT Q +E L L
Sbjct: 99  QYETRPENLDLAKLPRVENITSQ-YELLKL 127


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 488 EARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTT 667
           +AR + H++HF         +E R W   R +E+F +     R +AV  FF+   L  T 
Sbjct: 421 QARGQTHLSHF-------SKQEKREW---RVMEVFSLPTKAERSKAVRPFFRWFILALTV 470

Query: 668 ISEDE 682
           +  D+
Sbjct: 471 LEVDQ 475


>AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical
           protein Y67A10A.4 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 224 NQFELYPHDLQLYKIPPVENITLQEFETLALERV 325
           N++E Y   LQ +K   + NITL  F  ++LERV
Sbjct: 158 NEYE-YAQILQAFKPCKLRNITLSNFGFISLERV 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,194
Number of Sequences: 27780
Number of extensions: 250398
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)