Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p15
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0138 + 23067885-23068245,23068393-23068634 33 0.15
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 31 0.44
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172 31 0.78
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 30 1.0
06_03_1330 - 29375494-29376912 28 4.1
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511... 28 5.5
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 27 7.2
02_02_0030 - 6207784-6208154,6208286-6211310 27 7.2
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 27 7.2
02_01_0061 + 442288-442411,442445-445498,445630-446000 27 7.2
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 459 PNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSVQTPGLAS 322
P P S P A + P+ +T+ QQ TP P+ S QTP +S
Sbjct: 131 PPVSVPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSS 176
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 525 RQPARRYLHTLDFVGPSHQLQQPNEGFP*SHPKLRADCSQGPLALTK--RALQQSTPGPR 352
RQP +RY L + P Q ++PNE KL CS+ PL + K +L+Q
Sbjct: 27 RQPVKRYKSILAEIFPKTQDEEPNER---RIGKLCEYCSRNPLRVPKITVSLEQRIYKEL 83
Query: 351 RSVQTPGLASFALTIHSNVEVS 286
RS Q G A + I+ + VS
Sbjct: 84 RSEQY-GFAKVVMLIYRRLLVS 104
>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
Length = 618
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 456 WAVGAGVRVLQNRGCGDISVQADAE 530
W +G +RVLQN GCG S QA+++
Sbjct: 533 WDIGCPIRVLQNDGCG-TSPQAESQ 556
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 11 NLYNIFFYFTTECF*IIYNGFFKSIF 88
N N+ YF T+ F + G+FKSIF
Sbjct: 91 NQANVIRYFPTQAFNFAFKGYFKSIF 116
>06_03_1330 - 29375494-29376912
Length = 472
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 332 PGVCTDRRGPGVLCCSARFVRAKGPWL 412
PGVCT + +ARF A+ PWL
Sbjct: 40 PGVCTAWQSADAASATARFRAAQPPWL 66
>12_01_0620 +
5109756-5109758,5110016-5110255,5110264-5110653,
5110723-5110995
Length = 301
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 267 DQKSGGKILQHLNELSERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYN 416
D +I +H E+ +MK +A+ L DVV E LA G P N
Sbjct: 11 DDAEAREIERHYKEVKRKMKTRKAYNLNDVVFEGYRSLLAMHGRAKPDEN 60
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 315 ERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYNQLEALDETRENLRWAVGAGVRV 482
E +K G ++ DV E A A LGP D Y + DE + + AV VR+
Sbjct: 372 EFIKNGAKVIIADVQDELGHSAAAKLGP-DASYTHCDVTDEAQ--VEAAVDLAVRL 424
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 345 LTDVVPEYSAVALASLGPKDPGYNQLEALD 434
LT +VP + + L +L D GYNQLEA D
Sbjct: 427 LTGIVPSFGS--LPNLQDLDLGYNQLEAGD 454
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 465 QQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSV 343
++PN +HP R D S+ P L K + STPGPR S+
Sbjct: 825 RRPNVPRMPAHP--RHDGSRRPSILKKPQVTGSTPGPRPSL 863
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 345 LTDVVPEYSAVALASLGPKDPGYNQLEALD 434
LT +VP + + L +L D GYNQLEA D
Sbjct: 478 LTGIVPSFGS--LPNLHDLDLGYNQLEAGD 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,147
Number of Sequences: 37544
Number of extensions: 243295
Number of successful extensions: 708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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