Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p14
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    67   3e-13
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.15 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   1.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   1.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   2.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   4.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    23   5.5  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    23   7.2  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    23   7.2  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    23   7.2  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    23   7.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    22   9.5  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 66.9 bits (156), Expect = 3e-13
 Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +3

Query: 45  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKK 218
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F K
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 219 K 221
           K
Sbjct: 61  K 61


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 154 PWAACLSLDFLYCDTLCTLWHL 89
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 136 SLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 38
           S+ F +   L TL+H   + + + C G F +F+
Sbjct: 67  SISF-FSGLLLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 118 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 204
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 SPRKGTLPRVEDVMIVNSRVTVVSPNPSSKK 219
           SP +G+LPR     ++ + +++   NP   K
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNPPPVK 765


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 130 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 213
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 84  FCSTSCAVLVRSPFLS 37
           FC++ C + VRSP +S
Sbjct: 912 FCNSDCELPVRSPIVS 927


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 76  YVLRCFGTFTIFEFVRHDINKR 11
           Y L CF   T    +  DINKR
Sbjct: 225 YSLFCFWQLTFESHIAQDINKR 246


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 120 TVIPCVLCGIYIFCSTSCAVLVRSPFLSSFGTISTNVKES 1
           +V+ CV  G+  +    C VL+      SF  I   + +S
Sbjct: 141 SVLACVWYGVQAWIGGECVVLMIRSIWPSFSHIPNTMAKS 180


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 123 KKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKK 221
           K   E HA +  RR  + Q+G  G +  + K+K
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEK 93


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 156 RRRYDRKQQGYGGQSKPIF 212
           R  +DR Q GY G + P +
Sbjct: 329 RDSHDRHQHGYHGNANPYY 347


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 123 KKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKK 221
           K   E HA +  RR  + Q+G  G +  + K+K
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEK 93


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +1

Query: 46  W*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSR 183
           W  ++N   +++   + T YT++   + P    LP+   V  ++S+
Sbjct: 34  WTGHKNGQIKSSFGPSLTSYTQFIGHEGPVHQVLPQERGVFSLSSK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,739
Number of Sequences: 5004
Number of extensions: 14805
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)