Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p14
(222 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 65 7e-12
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 27 1.8
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 1.8
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 1.8
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 3.2
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 27 3.2
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 26 5.6
SB_7514| Best HMM Match : OATP (HMM E-Value=0) 26 5.6
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 26 5.6
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_50443| Best HMM Match : NinG (HMM E-Value=5.6) 25 7.4
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1) 25 7.4
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20) 25 7.4
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 25 7.4
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3) 25 9.8
SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 65.3 bits (152), Expect = 7e-12
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 39 SKMVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 212
S +VNVPKQR+T+ +QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 213 KKK 221
KK
Sbjct: 66 HKK 68
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 186 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 64
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 186 NPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 64
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 186 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 64
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 151 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 56
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 126 KSKERHAAQGRRRYDRKQQGY 188
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 162 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 55
VFYP P V+ C+ + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 123 CTVIPCVLCGIYIFCSTSCAVLVRSPFLS 37
CTV PCVL G C+ +C VL P S
Sbjct: 2123 CTVNPCVLNG---GCTHTCTVLDGKPVCS 2148
>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
Length = 763
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 151 WAACLSLDFLYCDTLCTLWHL 89
W L F+ C TLC W L
Sbjct: 331 WVGAWWLGFVVCGTLCIFWSL 351
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 58 QNSAGRTAKNVNATKYTRYH 117
+NS+GRT KN++AT H
Sbjct: 141 KNSSGRTCKNISATHKLSLH 160
>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 201 WTDHRNPAVYDHNVFYPGQRAFPWTFC 121
+ DHR H+ G+R +PW C
Sbjct: 66 YVDHRYGGENAHSPNQEGERGYPWLTC 92
>SB_50443| Best HMM Match : NinG (HMM E-Value=5.6)
Length = 477
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 201 WTDHRNPAVYDHNVFYPGQ 145
W D RN + D VFYPG+
Sbjct: 339 WKDGRNHGLGDVFVFYPGE 357
>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
Length = 550
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 114 IPCVLCGIYIFCSTSCAVLV 55
+P ++CG + C CA+LV
Sbjct: 209 LPAIVCGTVVGCFALCALLV 228
>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
Length = 392
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 210 RWVWTDHRNPAVYDHN 163
+WVW +H NP +N
Sbjct: 129 KWVWYEHENPVKMSNN 144
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 210 RWVWTDHRNPA 178
+WVW +H NPA
Sbjct: 310 KWVWYEHENPA 320
>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 210 RWVWTDHRNPAVYDHNVFY 154
+WVW +H NP HN+ Y
Sbjct: 145 KWVWYEHENP----HNIGY 159
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 132 WTFCTVIPCVLCGIYIFCST 73
W F +IP + GI +F T
Sbjct: 1537 WVFAAIIPALFVGILLFMET 1556
>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
Length = 280
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 108 CVLCGIYIFCSTSCAVLVRS 49
C LC Y+FC C + +RS
Sbjct: 217 CRLCDNYLFCLKFCDLRIRS 236
>SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 108 CVLCGIYIFCSTSCAVLVRS 49
C LC Y+FC C + +RS
Sbjct: 78 CRLCDNYLFCLKFCDLRIRS 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,771,389
Number of Sequences: 59808
Number of extensions: 137419
Number of successful extensions: 642
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 51
effective length of database: 13,771,249
effective search space used: 302967478
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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