Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p08
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 1.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 2.9
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 6.7
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 6.7
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 24 8.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 24 8.9
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 24 8.9
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 24 8.9
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 24 8.9
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 253 KSGAHTKTCSSSLQRNSNTFILCFTQNDESNDACSNTIL 137
K+G HT S S++F+L TQ D N SN L
Sbjct: 211 KNGVHTINNMQSSPSPSSSFLLPLTQIDSQNVKRSNNYL 249
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 321 RIKQAENEPRSYTIQSPEGTFRRNREH 241
R+K +N RS + + P T NR H
Sbjct: 525 RVKNTQNPSRSISAEPPSATSTANRRH 551
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 321 RIKQAENEPRSYTIQSPEGTFRRNR 247
++ QAE+ SY SPE T RNR
Sbjct: 1090 KLFQAEDTKNSYDQTSPEATQERNR 1114
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 294 EVRFLLVLYDLEPMNYWACV*NIFYHQL 377
E+ + L+++EP N W C + Y L
Sbjct: 270 EIELIQELHEMEPENRWCCESLVNYEAL 297
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 267 GTFRRNREHILKPVVPVSKETVIHLSYV 184
G FR +++H++ PV+ +E IH Y+
Sbjct: 301 GDFRASKDHVMHPVL---REKTIHKVYL 325
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 249 REHILKPVVPVSKETVIHLSYVLRRMTSQTTRVR--IQYYTSINSL 118
++++LK VVP E + ++YV+ + T V +QY I L
Sbjct: 17 QDNMLKAVVPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKEIEQL 62
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 270 EGTFRRNREHILKPVVPVSKETVI 199
EGTFR EH+++ V+ +KE+V+
Sbjct: 2195 EGTFRITCEHVMR-VLRTNKESVM 2217
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 78 CVEFVCETRELYIEERMERL 19
C+ C+T LYI + M R+
Sbjct: 70 CIPTTCDTEPLYIHDIMRRI 89
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 237 LKPVVPVSKETVIHLSYVLRRMTSQTTRVRIQYYTSINSLFVIQNTK 97
+ P+V KE L+Y++ ++ T Q+Y + ++ V++N K
Sbjct: 325 IPPMVENKKEV---LTYLISKVEEAITEANAQWYEAQGTVPVVENEK 368
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 315 LYDLEPMNYWACV*NIFYHQLVNLTIVLCVYYNKTLNI 428
L++L +W V +IF HQ + +V CV L+I
Sbjct: 161 LFNLYEGRWWTLVVSIFSHQNLAHLLVNCVAIYSFLSI 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,391
Number of Sequences: 5004
Number of extensions: 40925
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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