Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p08
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    29   2.2  
09_06_0100 + 20860850-20861055,20861082-20861203,20861412-20861563     28   2.9  
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    28   3.8  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    27   5.0  
01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111     27   5.0  
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886...    27   6.6  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     27   8.7  

>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 300 EPRSYTIQSPEGTFRRNR-EHILKPVVPVSKETVIHLSYV-LRRMTSQTTRVRIQY 139
           E R+  I+     FRR R EH ++ ++ V KE  +H+  V   R  + + +VR  Y
Sbjct: 151 ETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNFSNKVRASY 206


>09_06_0100 + 20860850-20861055,20861082-20861203,20861412-20861563
          Length = 159

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 320 RPGTHELLGLCLKYILSPTCKSDNC 394
           R G  E+ GL L + +SPTC S NC
Sbjct: 32  RGGNAEVFGLLLDHAMSPTC-STNC 55


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 438 FFXEYSTFYYNKHTKQLSDLQVGDKIYFKHKPNSSWVPGRIKQAENEP 295
           F  E    +  KH ++ S +       F   P+SSW+ G  K+    P
Sbjct: 462 FTKEKDAMHGKKHHEETSTMHSSYSNLFDPAPSSSWITGNFKEPSVMP 509


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 240 ILKPVVPVSKETVIHLSYVLRRMTSQTTRVRIQYYTSINSL 118
           IL P +     TV+HLS           R+RI ++ +++SL
Sbjct: 637 ILSPFIVAQASTVLHLSKSNLYFRPDLERIRITFFCTMDSL 677


>01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111
          Length = 212

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 306 ENEPRSYT-IQSPEGTFRRNREHILKPVVP 220
           + +P+ Y+ IQSP      NREHI+   VP
Sbjct: 40  DGQPQEYSCIQSPSPVATSNREHIIPNWVP 69


>01_05_0478 -
           22587881-22588021,22588126-22588266,22588436-22588643,
           22589199-22589238,22589425-22589647,22590826-22590970,
           22591053-22591156,22591298-22591396,22591506-22591684,
           22591948-22592167
          Length = 499

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 405 KHTKQLSDLQVGDKIYFKHKPNSSWVPGRIKQAE---NEPRSYTIQSPEGTFRRNREHIL 235
           K  KQL+ L  GD++  +    +S V  +IK      ++PR    ++P+    + +E   
Sbjct: 198 KAVKQLNVLSFGDEVEEEENEAASSVKDKIKSIHDVLDDPRFLKGEAPDEQLTKEQEDKK 257

Query: 234 KPVVPVSKETVI 199
           K  V   +E ++
Sbjct: 258 KETVQSVREALV 269


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 384 DLQVGDKIYFKHKPNSSWVPGRIKQAENEPRSYTI 280
           D +VG  ++ + + N SW PG+I  A+  P +  +
Sbjct: 21  DAEVGALVWVRRR-NGSWWPGQILSADELPENCVV 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,735
Number of Sequences: 37544
Number of extensions: 216987
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)