Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p08
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-2|AAB92037.1| 224|Caenorhabditis elegans Hypothetical ... 29 1.5
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 28 2.6
U61949-9|AAB03156.3| 433|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical p... 27 6.0
AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical... 27 6.0
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 27 6.0
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 27 7.9
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical ... 27 7.9
>AF038611-2|AAB92037.1| 224|Caenorhabditis elegans Hypothetical
protein E04A4.2 protein.
Length = 224
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 249 REHILKPVVPVSKETVIHLSYVLRRMTSQTTRVRIQYYTSINSLFVIQNTKSFIAQHCVE 70
RE +++P P KE ++ Y +RRM + + + S+ +FV N + I +
Sbjct: 161 RELLVQP--PGEKEQIVKGGYDVRRMDGTVATIIVDHIQSLLKMFVRVNKEYIITIIIIY 218
Query: 69 FVCE 58
+V E
Sbjct: 219 YVLE 222
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 232 TCSSSLQRNSNTFILCFTQNDESNDA 155
T S + +RN N I+CFT +D+ DA
Sbjct: 140 TYSEAHKRNVNQAIVCFTSHDDLRDA 165
>U61949-9|AAB03156.3| 433|Caenorhabditis elegans Hypothetical
protein F49E8.1 protein.
Length = 433
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 297 VRFLLVLYDLEPMNYWACV*NIFYHQLVNLTIVLCVYYN 413
VR + ++ +L+P CV N+ +++ V+L + + +YYN
Sbjct: 248 VREIAIILELDPSLVARCVRNLHFYECVSL-VPMFLYYN 285
>Z81104-10|CAB03214.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -2
Query: 285 TIQSPEGTFRRNREHILKPVVPVSKETVIHLSYVLRRMTSQTTRVRIQYYTSINSLFVIQ 106
T+Q + +H + + +SK + H + Q T + YYTSI L V+
Sbjct: 189 TLQQVRERLADHADHYRQLLQRLSKVAICHTIVFSLYLCWQVTNSFLSYYTSIPVLMVVT 248
Query: 105 NTKSF 91
+ +F
Sbjct: 249 DVVTF 253
>AL033510-11|CAA22071.1| 293|Caenorhabditis elegans Hypothetical
protein Y40H7A.8 protein.
Length = 293
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -2
Query: 285 TIQSPEGTFRRNREHILKPVVPVSKETVIHLSYVLRRMTSQTTRVRIQYYTSINSLFVIQ 106
T+Q + +H + + +SK + H + Q T + YYTSI L V+
Sbjct: 189 TLQQVRERLADHADHYRQLLQRLSKVAICHTIVFSLYLCWQVTNSFLSYYTSIPVLMVVT 248
Query: 105 NTKSF 91
+ +F
Sbjct: 249 DVVTF 253
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 271 RRNIQEKSGAHTKTCSSSLQRNSNT-FILCFTQNDESNDACSNTILYLD 128
+++I ++ T+ SL NS T F+ C + D ++ NT+ Y D
Sbjct: 275 QKHIPYRNSVITRVLQDSLGGNSFTVFLACISPADSNSQETLNTLRYAD 323
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 282 IQSPEGTFRRNREHILKPVVPVSKETVIHL 193
++ +G +R H+LK ++P SKE V+ L
Sbjct: 552 VELVKGFVQRRTHHLLKKILPESKEYVLLL 581
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 208 FFGDWNYRF*YVLPISPECSFWGLNSITTRFVFCLFYTT 324
+ GD F VLP F G++ + T F + LF TT
Sbjct: 440 YLGDKCPSFTEVLPTGQTSIFLGVSLLATSFTYLLFATT 478
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 241 HTKTCSSSLQR-NSNTFILCFTQNDESNDACSNTIL 137
H TCSS +Q S++ QNDE NDA + T L
Sbjct: 259 HLSTCSSLIQNIPSSSQSTPALQNDEWNDANTETTL 294
>AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical
protein C03H5.6 protein.
Length = 530
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 186 VLRRMTSQTTRVRIQYYTSINSLFVIQNTKSFIAQHCVE 70
+ TSQT +I TSI F I+ T++F ++ +E
Sbjct: 383 IFTNQTSQTNHTKIVTMTSIPKAFNIRRTQNFDFENKIE 421
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,425
Number of Sequences: 27780
Number of extensions: 226960
Number of successful extensions: 678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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