Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p03
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   1.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   1.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   7.4  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    24   9.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   9.8  

>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 191 MSLKHAALSLWMRLYDRLRSLFSCLLHDQTLSRNSK 298
           M+ +H  LS   +L DR++SLF    HD++  RN++
Sbjct: 523 MTCEHGELSSKHKLGDRVKSLFGS--HDESGLRNNE 556


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 97  TRNPFSRKLGQQITVMRHSARCRVRAPDHLRNVPQTCRTVPLDALVRQTAFTL 255
           +RNP    L      M +  R  +R P +L NVP    T  LD L     F L
Sbjct: 687 SRNPSHGSLNTAHAGMGYGPRSMMRDPQNLSNVPPVSNT--LDQLSGNADFEL 737


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 212 LSLWM-RLYDRLRSL---FSCLLHDQTLSRNSKVLYEKKETACYFASIILVVFV 361
           + LW   LY + RS+       +HD+ L R +  +       C+ A + LV+F+
Sbjct: 162 MRLWKPALYKKFRSINRDADIDIHDEPLKRPNTSISNVIWLICFGAPLFLVIFI 215


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 208 RTVPLDALVRQTAFTLQLSAS*PNTVSKFEGSLRKEG 318
           R   LD+ ++Q      L +S P    +  GSL +EG
Sbjct: 234 REASLDSTIKQPLSASLLESSEPKEKEEIVGSLEEEG 270


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 177 RRPHTATRRMSHYSYLLAQFS*KRIPRRPMVPDT 76
           RR +   R M +YS  L  F  K+ PR    P+T
Sbjct: 10  RRWNRFRREMCNYSKRLDTFQKKKWPRAKPTPET 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,322
Number of Sequences: 5004
Number of extensions: 29789
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)