Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p03
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                       28   2.4  
01_05_0454 + 22381302-22382642                                         27   4.1  
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906...    27   5.5  
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...    27   5.5  
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249...    26   9.6  
01_03_0044 - 11927272-11928516                                         26   9.6  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 73  CSVRYHGTTRNPFSRKLGQQITVMRH---SARCRVRAPDHLRN-VPQTCRTV 216
           C+V +H   R  F+R  G    V+ H   +   R++ P   +  VP +CR +
Sbjct: 114 CNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAM 165


>01_05_0454 + 22381302-22382642
          Length = 446

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 231 KRIQRDSAACLRDIPQVVRRPHTATRRMSHYSYLLA 124
           + ++R SAAC R    ++RRP  ATR    +S LL+
Sbjct: 20  QHLRRASAACRR-YGDIIRRPGFATRHRELHSPLLS 54


>07_03_0482 +
           18589573-18589728,18589889-18590065,18590518-18590688,
           18590913-18591029,18591614-18591742,18592210-18592311,
           18592412-18592498,18592585-18592638,18594880-18595016,
           18595181-18595235,18596133-18596188,18596275-18596334,
           18596442-18596529,18596634-18597371,18597451-18597511,
           18598301-18598403,18599180-18599311,18599393-18599477
          Length = 835

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 298 GSLRKEGDSLLLCLYHFSSVRFPIQ*RYNNKKK 396
           G ++ +G ++L C Y  S+ RFP   RYN+  K
Sbjct: 366 GEIQHQGHNILRCNYCSSTTRFP---RYNDPYK 395


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 191 FLRWSGALTRQRAECLITVICWPNFLEKGFLVVPWYL 81
           ++ W+G LT +  E L+TV+  P    + F V  W+L
Sbjct: 68  YVEWAGELTPEELERLMTVVANP----RQFKVPDWFL 100


>11_01_0334 +
           2495275-2495433,2495553-2495661,2496311-2496378,
           2496476-2496577,2496853-2497003,2497173-2497222,
           2497432-2497557,2497761-2497863,2498104-2498204,
           2498540-2498677,2498768-2498911,2499028-2499103,
           2499224-2499309,2499432-2499560,2500572-2500674,
           2500776-2500843,2500912-2501013,2501432-2501527,
           2501723-2501848,2502152-2502254,2502427-2502569,
           2503017-2503154,2503248-2503391,2503535-2503610,
           2503883-2503968,2504135-2504212,2505180-2505254,
           2505362-2505496,2506240-2506272,2507886-2507905,
           2508570-2508666,2508899-2509000,2510612-2510725
          Length = 1126

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 121 LGQQITVMRHSARCRVRAPDHLRNVPQTCRTVPLDALVRQTAFTLQLSAS 270
           LG+Q+ V  +S     +     +N  +  +   +DA+V  TA  LQ+  S
Sbjct: 210 LGEQVGVPVYSEGTEAKPAQITKNAVEEAKRKNIDAIVMDTAGRLQIDKS 259


>01_03_0044 - 11927272-11928516
          Length = 414

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 197 GTFLRWSGALTRQRAECLITVICWPNFLEK 108
           G F+R SG      A+C++TV  W + L K
Sbjct: 197 GVFVRTSGGEEFHGAKCVVTVGAWTSKLVK 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,032
Number of Sequences: 37544
Number of extensions: 182715
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)