Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20p01
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 32 0.087
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 30 0.35
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 28 1.4
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.9
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.5
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 3.3
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 10.0
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 10.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 10.0
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 10.0
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 31.9 bits (69), Expect = 0.087
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Frame = +2
Query: 107 IFVIILLCFAACL--CERGDYIGCYVLKAEEV-LNTHTGQSVDACLNACEQVHYKYALIG 277
+F + LL + L + GCY++ + T T C N A +
Sbjct: 14 LFFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGTFTYLDPAYCYNNICGGSDNIAFVA 73
Query: 278 -NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCGGNNATSVYDT 409
+ C+CG++ ++ C T CP + CGG+ SVY T
Sbjct: 74 IRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGGDLYWSVYLT 118
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 29.9 bits (64), Expect = 0.35
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 461 ETTVRLRWSAPNAYSFITSYVIRAAVIETYSD-YNLKPLEWRVSNETLNMELLNLHPGSK 637
E+ R+ +S PNA S +Y + + E+ + Y + L+W +E+LN+ N P
Sbjct: 284 ESLARMPYS-PNAVS--RNYAMNMTLPESIPEGYEIDKLDWMSFSESLNLPTFN-QPSGP 339
Query: 638 YNISVAALN 664
++S + LN
Sbjct: 340 SDVSASFLN 348
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 599 LNMELLNLHPGSKYNI-SVAALNYD 670
LNMEL N +PG+ +NI SV +L D
Sbjct: 603 LNMELFNDYPGNMHNIKSVLSLEID 627
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 416 VAPGQPSNLVLFNATETTVRLRWSAPNAYSFITSYVIRAAVIETYSDY-NLKPLEWR-VS 589
+AP PSN N+ E T+ L P++YS V+ + E ++ N+ L+ + +S
Sbjct: 145 LAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILKSQGLS 204
Query: 590 NETLNMELLN 619
NE+ + L+N
Sbjct: 205 NESRLLSLVN 214
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 278 NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCG 379
+ S+C +S + LP D+ T CPK CG
Sbjct: 84 SNSSCSIPSSISEKLLPRDNVKTHCPKRSASCCG 117
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +2
Query: 92 KWFQRIFVIILLCFAACLCERGDYIGCYVLKAEEVLNTHTGQSVDACLNACEQVHYKYAL 271
K + +F +++ CLCE D+ C +L + +N +SV+ A
Sbjct: 106 KEIRHLFPELVVACDVCLCEYTDHGHCGLLYEDGTIN--NAKSVERIAEVSGNYALAGAQ 163
Query: 272 IGNESTCFCGNSPG-KFKL-PLDSCHTVC 352
I + S C G K KL L+ H VC
Sbjct: 164 IISPSDCMDGRVKAIKQKLVELELSHKVC 192
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 413 VVAPGQPSNLVLFNATETTVRLRWSAPNAYSFITSYVIRAAVIETYSDYNLKPLEWRVSN 592
++ G ++L+ A T ++A N SFI + + A+ +E L + VSN
Sbjct: 118 IMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSN 177
Query: 593 ETLNMELLNLHPGSKYNISVA 655
+L +HP + +++A
Sbjct: 178 RSLEAGDDGVHPTAGQTLNIA 198
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 539 IETYSDYNLKPLEWRVSNETLN 604
IE +S+ N K +EW SN++L+
Sbjct: 131 IEFHSNENSKKIEWTWSNQSLH 152
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 643 VVLGPRMQV*EFHI*SFIGYSPFQWFQIVIRISF 542
++LGP E H+ F +PF W+ ++ ++F
Sbjct: 551 LLLGPLRFFYEQHLQVFFMGNPFVWYSVISLVAF 584
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 257 YKYALIGNESTCFCGNSPGKFKLPLDSCHTVCPKNETQKC 376
+ Y GN ST N +FK +D+ TV N+T +C
Sbjct: 301 FNYLKQGNCSTIEGVNDKEEFKATVDALKTVGIDNDTCEC 340
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 276 AMNLLVSAAIHRESSNCP*TPVTRYALRTKLKNAAV-TMLLVYMIRM 413
A L+ IH+ S++C T ++ Y + K+KN V T L Y++ +
Sbjct: 967 AAECLIIWQIHQGSASCASTFLSIYEMALKIKNWDVCTELSSYLVSL 1013
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,189
Number of Sequences: 5004
Number of extensions: 59061
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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