Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p01
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0610 - 17972032-17972835                                         34   0.090
06_01_1019 - 7971606-7972077,7972550-7972752                           29   3.4  
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547     29   4.5  
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     28   5.9  
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    28   5.9  
11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227     28   7.8  
06_01_1100 + 9032231-9032419,9033086-9033193                           28   7.8  
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    28   7.8  

>04_03_0610 - 17972032-17972835
          Length = 267

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 446 LFNATETTVRLRWSAPNAYSFITSYVIRAAVIETYSDYNLKPLEWRVSNETLNMELLNLH 625
           ++N +  +      A N ++F TSY + +A  +TY+      L+W + N+T      N +
Sbjct: 161 IYNMSRCSYAALVEASN-FTFSTSYAMSSAFNDTYAGQAPLLLDWAIGNQTCEAARRNPN 219

Query: 626 PGSKY 640
           P  KY
Sbjct: 220 PDPKY 224


>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 428 QPSNLVLFNATETTVRLRWSAPNAYSFITSYVIR--AAVIETYSDY 559
           Q   +VL   TE T+  RWS    YS  ++Y+I+    V +  SD+
Sbjct: 124 QIQQVVLQEGTEDTIMWRWSPNGTYSAKSAYMIQFVGGVQDNMSDF 169


>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
          Length = 690

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +2

Query: 41  YNKLM-VMIRNCCLETMEKWF 100
           YN+ + VMI+NCC + +EK++
Sbjct: 223 YNRFIGVMIKNCCFDLVEKYY 243


>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
 Frame = +2

Query: 44  NKLMVMIRNCCLETMEKWFQRIFVIILLCFAACLCERGDYIGCYVLKAEEVL-NTHTGQS 220
           +++ ++ R+ C E++E+W+ R ++   LC      E    +G +  + E +L + H    
Sbjct: 286 DEMWLLERDGC-ESLERWYCRFYLTTRLCM-----EVQQVVGPHFTQGEHILAHRHGSLY 339

Query: 221 VDACLNACEQVHYKYALIG-----NESTCFCGNSPGKFKLPLDSCHTVCPKNETQKCGGN 385
           V  C+++  +     A I      +E    CG++            T  P N  Q  GG+
Sbjct: 340 VHRCVSSATRPQCSVAQIHEHWPYHEPMFTCGHASN--IRAFSYIETTEPLNVYQCNGGS 397

Query: 386 NATSVYDTD-VVAPGQPSNL 442
              SV + D  +A G+ ++L
Sbjct: 398 KIGSVVNNDEEMATGKTTSL 417


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 KNETQKCGGNNATSVYDTDVVAPGQPSNLV 445
           +N  QK G   A+  YD D  AP QPS+++
Sbjct: 889 RNLCQKVGITIASRKYDLDAAAPFQPSDIL 918


>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
          Length = 492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 230 CLNACEQVHYKYA-LIGNESTCFCGNSPGKFKLPLDSC 340
           CL + + VH  +  + G E  CF  NS     L + SC
Sbjct: 158 CLRSLKSVHLSWVDITGEELACFISNSFNLESLEISSC 195


>06_01_1100 + 9032231-9032419,9033086-9033193
          Length = 98

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 489 ADQRSLTVVSVALNRTRLLG*PGA--TTSVSYTLVALLPPH 373
           A  +++ VV + + R  +    G    T  SYT++ LLPPH
Sbjct: 4   ASAQAVAVVRILILRVSIYDGGGTPEVTEASYTILVLLPPH 44


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 490 SRPTQSHCSLCGVK*DQIAWLTWSDHIRII 401
           S P Q H SL G    +++W+T   H++ +
Sbjct: 50  SHPQQVHVSLVGANHMRVSWITEDKHVKSV 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,896
Number of Sequences: 37544
Number of extensions: 369894
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)