Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20p01
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              31   0.013
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.50 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
 Frame = +2

Query: 302  NSPGKFKL-PLDSCHT-VCPKNETQKCGGNNATSVYDTDVVAPGQPSNLVLFNATETTVR 475
            N  G F L P  + H  +  +NE      ++  ++   +    G P+++ + +  + T++
Sbjct: 935  NVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIRVDDLDQHTLK 994

Query: 476  LRWSAPNAYSF---ITSYVIRAAVIETYSDYNLKPLEW-RVSNETLNMELLNLHPGSKYN 643
            + W  P    +   I  Y +   +  +   Y  + +++ +   +  +++++NL   ++Y+
Sbjct: 995  VTWKPPPREDWNGEILGYYVGYRLSSSEKPYMFETVDFSKEDGKEHHLQIMNLKTYTQYS 1054

Query: 644  ISVAALN 664
            + V A N
Sbjct: 1055 VVVQAFN 1061



 Score = 29.5 bits (63), Expect = 0.031
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +2

Query: 380  GNNATSVYDTDVVAPGQPSNLVLFNATETTVRLRWSAP-NAYSFITSYVIRAAVIETYSD 556
            G++ TS+       P  P  L + + +  +V+L W+AP +  S I  YVI   + +   +
Sbjct: 862  GSDDTSINMIVQEVPEVPYGLKVLDKSGRSVQLSWAAPYDGNSPIKRYVIEYKISKGSWE 921

Query: 557  YNLKPLEWRVSNETLNMELLNLHPGSKYNISVAALN 664
             ++  +    S + +   + NL P + Y++ + A N
Sbjct: 922  TDIDRVLVPGSQQNV-AGVFNLRPATTYHLRIVAEN 956


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 422 PGQPSNLVLFNATETTVRLRWSAPN 496
           P  P NL +    ++TV L W+AP+
Sbjct: 318 PSAPQNLTVNFVDQSTVFLSWNAPH 342


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 452 NATETTVRLRWSAPNAYSFITSYVIRAAVIETYSDY 559
           N+T  T+  +   P+ YS+I    + A  + TY  Y
Sbjct: 625 NSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICY 660


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 490 SRPTQSH--CSLCGVK*DQIAWLTWSDHIRIIY 398
           SRP +S    S  G+   ++  L W DH  I+Y
Sbjct: 48  SRPRESAQTTSKAGIHRKKVLLLVWWDHKGIVY 80


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 221 RIDPCAYLILLRLLAHSSQCNLHVHIN 141
           R+D   +L L+RL+  +   N+  HI+
Sbjct: 325 RVDETTFLGLIRLIVLNLSYNMLTHID 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,807
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)