Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o24
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   1.2  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   2.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   6.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   6.3  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   8.3  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 273 DISEHIER-LSVSVNRPLFLSIFP 205
           DI+E  ER ++  +NRP+FL+ FP
Sbjct: 438 DIAEAAERKMTDQINRPIFLTYFP 461


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 333 LWNDGWTF-SLSGAPTRCLPFDISEHIERLSVSVN-RPLFLSIFPDPEDQMVNNHRRPKH 160
           LWN+   F ++  APTR L + ISE  E +  S+  R + +    D   Q V   ++P H
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKP-H 166

Query: 159 VTSDPPDPLSSTTNN 115
           V    P  L     N
Sbjct: 167 VLVCTPGRLMDHLEN 181


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 29  YLIIVYFNSFSIFHSCLLPQYKNVYKP 109
           + I   ++ FS FH  LL  Y N Y P
Sbjct: 204 FFIARKYSDFSHFHHLLLKSYPNAYVP 230


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  NSFSIFHSCLLPQYKNVYKPTQLFVVLDRGSGGSEVT 160
           +SF  FHS +L  Y  + +   + ++   G GG++ T
Sbjct: 731 HSFEDFHSPILLTYSAIRRCDNIVLIAGSGFGGADDT 767


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 201 PEDQMVNNHRRPKHVTSDPPDPLSSTTNN 115
           P+DQ     ++P+   + P +P  + TNN
Sbjct: 315 PQDQPSTQQQQPQRTAAPPNNPNVNATNN 343


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 212 ILKNSGRFTETERRSICSEISNGKHRVGAPESENVQ 319
           +L+ SGR   +E R     +S+    V  PESE+++
Sbjct: 290 LLRISGRAELSENRDFFKHLSSLMEAVAKPESESLR 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,479
Number of Sequences: 5004
Number of extensions: 32464
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)