Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o24
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29613-1|AAC47060.1|   94|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   5.7  
U37430-6|AAB52672.1|  414|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U29613-1|AAC47060.1|   94|Caenorhabditis elegans Hypothetical
           protein K02A6.1 protein.
          Length = 94

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 317 QPSFHRTKHGFWSNVQCVKENF 382
           +P FH  ++ F+S  QC+ ENF
Sbjct: 31  RPDFHFKRNCFFSPAQCILENF 52


>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 39  LSTLIVFLFFIHVCYLNTRMSINL 110
           L+TLI  LF I +CYLN  + I++
Sbjct: 7   LTTLISILFAITICYLNFLLLISI 30


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 163 FWTTMIVYHLILWIGKNTQKQRAIYRNREALNM-FRDIKW 279
           FW  + V H+ L        +R ++  ++ LNM  R  KW
Sbjct: 450 FWFVLAVTHVSLSKKNTKNNRRTVFTTKDTLNMNLRQSKW 489


>U37430-6|AAB52672.1|  414|Caenorhabditis elegans Hypothetical
           protein K09F5.1 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 39  LSTLIVFLFFIHVCYLNTRMSINLLNYLSYL 131
           +S  +  LFFI++C L+ ++SI    Y+S L
Sbjct: 362 ISLCVTSLFFIYICVLDNQVSIWKPYYISQL 392


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 42  STLIVFLFFIHVCYLNTRMSINL 110
           +TLI+ LF + +CYLN  + I++
Sbjct: 8   TTLILILFSVFICYLNFLLLISI 30


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
           protein W06A7.3f protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 276 FDISEHIERLSVSVNRPLFLSIFPDPEDQMVNNHRRPKHV 157
           F  +EH+  L  ++ + + ++  P P D++V+   RP+ V
Sbjct: 803 FGDAEHVSYLDANIEKLVAMADEPLPVDELVSIEERPEEV 842


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
           protein W06A7.3c protein.
          Length = 2484

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 276 FDISEHIERLSVSVNRPLFLSIFPDPEDQMVNNHRRPKHV 157
           F  +EH+  L  ++ + + ++  P P D++V+   RP+ V
Sbjct: 803 FGDAEHVSYLDANIEKLVAMADEPLPVDELVSIEERPEEV 842


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
           protein W06A7.3a protein.
          Length = 2607

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 276 FDISEHIERLSVSVNRPLFLSIFPDPEDQMVNNHRRPKHV 157
           F  +EH+  L  ++ + + ++  P P D++V+   RP+ V
Sbjct: 803 FGDAEHVSYLDANIEKLVAMADEPLPVDELVSIEERPEEV 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,460,893
Number of Sequences: 27780
Number of extensions: 189460
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)