Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o24
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 QRAIYRNREALNMFRDIKWQTPCWRARKRKCPTV 324
           + A+Y+ +   N   D+  +  C   R +KC TV
Sbjct: 217 KNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTV 250


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 QRAIYRNREALNMFRDIKWQTPCWRARKRKCPTV 324
           + A+Y+ +   N   D+  +  C   R +KC TV
Sbjct: 14  KNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTV 47


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 51  IVFLFFIHVCYLNT 92
           I+ L  + VCYLNT
Sbjct: 555 IILLAGVLVCYLNT 568


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 51  IVFLFFIHVCYLNT 92
           I+ L  + VCYLNT
Sbjct: 645 IILLAGVLVCYLNT 658


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,739
Number of Sequences: 438
Number of extensions: 2135
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)