Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o23
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    28   0.61 
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   2.5  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.7  

>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 150 PSILINLFIFTVIL-KYM*FSNHN**KKILFDVGMNG 43
           P++L+ +F+  + L KY+ F+N +   ++LF +G  G
Sbjct: 72  PAVLLPVFVINIALFKYLVFANFSTKDRVLFGLGNGG 108


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 235 DVRQAVLSSASLRPRIXEALERINFRFHRTCSFSNIIRDC 354
           DV  + L   ++  +  ++  ++N   H T  + NI RDC
Sbjct: 309 DVLHSALGLYAMAYQDDKSFPKVNADIHMTSKYINICRDC 348


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 289 ALERINFRFHRTCSFSNIIRDCYVNEAETLLMYRGC 396
           A E+ N +   + +F N  +    + A TL+MY GC
Sbjct: 335 AYEKANVKVASSLAFLNSGQAIIFSTALTLMMYMGC 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,749
Number of Sequences: 5004
Number of extensions: 28447
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)