Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20o23
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182...    29   1.4  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    27   4.1  
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    27   5.5  
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    27   7.2  
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185...    26   9.5  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    26   9.5  

>03_05_0055 -
           20316184-20317349,20317786-20317926,20318097-20318222,
           20318382-20318429,20318536-20318640,20318746-20318890
          Length = 576

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 211 DFTRQTVQDVRQAVLSSASLRPRIXEALERIN 306
           DF RQT  D +   L     RP + EAL+ +N
Sbjct: 544 DFIRQTFMDKQNVKLDCKRFRPILLEALDNLN 575


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 208 DDFTRQTVQDVRQAVLSSA--SLRPRIXEALERI 303
           DD+ R+ + D  Q +LSSA  +LRPR  E L+R+
Sbjct: 627 DDYARRNMYD--QDMLSSADDALRPRYMECLDRM 658


>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 203 RRMISQDKQCRM*DRQSSHRPRSDQEFXKL*KESILDFIEL 325
           +R ISQ       D Q   R R  ++  K  KE +LDF E+
Sbjct: 53  KRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEI 93


>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 208 DDFTRQTVQDVRQAVLSSASLRPRIXEALERI 303
           DD+ R+ + D      +  +LRPR  E L+R+
Sbjct: 613 DDYARRNMYDQNMLSSTDDALRPRYMECLDRM 644


>05_03_0633 +
           16416913-16417009,16417976-16418060,16418398-16418551,
           16418808-16419023,16419105-16419241,16419317-16419408,
           16419622-16419804,16421722-16421819,16422021-16422070,
           16424605-16424756,16424944-16425069,16426315-16426523
          Length = 532

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 366 LIHVTISNYIGKAASSMKSKIDSF*SFXNSWSERG 262
           LI++ +S+   K  +  K+K+  F    N W ERG
Sbjct: 355 LIYLDVSHVFEKGFNWRKAKLYRFDKEGNQWKERG 389


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 219 CEIIRLVGIYEAXSCYKSVHFSKPSI 142
           C ++     Y A  CYK+V  +KP I
Sbjct: 62  CVLLAFGYAYPAYECYKTVELNKPEI 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,435
Number of Sequences: 37544
Number of extensions: 161189
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)